Solanum pennellii: 107024274
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Entry
107024274 CDS
T04130
Name
(RefSeq) THO complex subunit 6
KO
K13175
THO complex subunit 6
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107024274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107024274
03041 Spliceosome [BR:
spen03041
]
107024274
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
107024274
Spliceosome [BR:
spen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107024274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_CDC20-Fz
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_EIPR1
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
107024274
NCBI-ProteinID:
XP_015080707
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All DBs
Position
7:complement(59699023..59754476)
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AA seq
377 aa
AA seq
DB search
MATAMDCRNWEEDTYRDSIILERESQCRTVFRTAFAPNPDHNSYPDLIVAAISDGSIAAY
SISSCLGLNSAGNSLVPVAEPSWLVQGHDGPAYDVKFYGNHEDSLLLSCGDDGRIRGWKW
KEMLGSKESAQGGVSKPVLDLVNPQKKGPWGALSPLPENNCVAVNTQTGSIFAASGDSCA
YCWDVEKNEIKMVLKGHSDYLHCIVARNSHNQVITGSEDGTARIWDCRTGKCIQIIDPQK
DKKLKELYPYVSCIALDASESWLACGSGRSLSVWNLPACECVSGITTSAATQDVSFDDNQ
VLSVGAEPLLSRFDLNGGIISQIPCAPQSLFSISAHPSGVTAVAGYGGIVDIVSQFGSHL
CTFQCRGVQKGLPMQLI
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagccatggactgcagaaactgggaagaagacacatacagagattccattata
ctcgagagagaatctcaatgtcgaacggtcttccggactgcatttgccccgaacccggac
cataattcctatccggacctcatcgtcgccgccattagcgacggctccattgcggcttac
tctatctcttcttgccttggattgaactccgcgggcaattcattggtgccagtagctgaa
cctagttggctggtacaaggacatgatggacctgcttatgatgttaaattttatggtaac
catgaagattcactattattgagttgtggtgatgatggtcggattcgaggatggaagtgg
aaagaaatgttgggatctaaggaatcagcacaaggaggcgtatcaaagccggtacttgac
ttggtaaatcctcagaagaaaggtccgtggggggcgctttctccattacctgaaaataat
tgcgtggctgttaatactcagaccggatccatatttgctgcttctggtgattcttgtgca
tattgctgggatgtggagaagaatgaaataaagatggttcttaaaggacattcggactac
ttgcattgcattgttgcgcgaaattctcacaatcaggtcattactggttcagaggatggg
acagcacggatatgggattgcagaactggtaaatgtattcaaataattgatccccagaag
gataagaagttaaaggagttgtatccgtatgtcagttgcatagctcttgatgcaagcgag
agttggctggcttgtggaagtggccggtctttatctgtttggaatcttcctgcgtgtgaa
tgtgtttcaggtatcacgacgagtgctgctacccaggatgtctcatttgatgataatcaa
gttttatcagttggagcagagccactacttagtcgctttgacctgaatggaggtattatt
tcacagataccatgtgctcctcagtcattgttttccatttctgcacatccttcaggggtc
acagcagtagctggttacggaggaatagtggatattgtatcacaatttggtagtcatttg
tgcacattccagtgccgaggagttcagaagggactgccaatgcagctaatttaa
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integrated database retrieval system
