Solanum pennellii: 107024325
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Entry
107024325 CDS
T04130
Name
(RefSeq) autophagy-related protein 18b isoform X1
KO
K17908
autophagy-related protein 18
Organism
spen
Solanum pennellii
Pathway
spen04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
107024325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107024325
03029 Mitochondrial biogenesis [BR:
spen03029
]
107024325
Membrane trafficking [BR:
spen04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
107024325
Mitochondrial biogenesis [BR:
spen03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
107024325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
107024325
NCBI-ProteinID:
XP_015080769
LinkDB
All DBs
Position
7:1228147..1234392
Genome browser
AA seq
365 aa
AA seq
DB search
MANQPSSYPILCASFNQDNSCFAIGTREGFKIFDCNTGRLLYERVAGAFIIVEMLFSSSL
LAIVGAGEQPSLSPRRLCLFNTVTVVALEELNFLTSILAVRMNKKRLIVILQEKTFIYDI
NSLKILDTIDTVPNPKGLCAFSPSLDGSFLALPASTTKGSLLVYNVSDLRLHCEIDAHRS
PLAVLSLSSGGTHIATASEQGTMIRIHLVSDATKSYSFRRGSYSSNIFSLSFAPAPELPD
ILLATSSSGSVHVFSLGSPPNQRSSGLLGSIKVPHTINDALDPAQHCILHHAVPAGVRSN
TLIRKIEKFEETATPEHVVLRATIPMITYGGYFLEYVYNVNHQNKSSWTLEREFNLLSAE
TSSLP
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatcaaccctcttcttacccaattctttgtgcttccttcaatcaagacaacagt
tgctttgccattggaacgagggaagggttcaaaatttttgattgtaatactggaagacta
ctttatgaaagagttgctggagcatttattatagtagaaatgttgtttagctcaagcctt
ctcgcaattgttggagctggtgaacagccgtcgttgtcgcctcgaagactgtgtttgttt
aatactgtgactgtagtagctcttgaggaactaaacttcttaacttctatccttgctgtt
cgcatgaataagaaaagattgattgtcatattgcaggagaagacatttatttatgatata
aatagtcttaagatactggacacaattgatacggtgccgaatccaaaaggactttgtgca
ttttcacccagcttggatggttcatttctggctcttccagcaagtacaaccaaaggatct
ttgctagtctataatgtttccgatctccgtttgcactgtgagatagatgctcatcgctca
ccattggcagtcttgagtctttcatcaggtggaactcacattgcaacagcatctgaacaa
gggaccatgatcagaattcatcttgtttcagatgcaactaagtcatatagcttcaggaga
ggatcatactcttcaaatatcttttctttgtcattcgcgccagcgccagaacttccagat
attcttcttgcaactagttcttctggttctgttcatgttttctctttgggttcaccccca
aatcaaaggtcttctggtcttctaggatcaataaaagtacctcatactattaacgatgcc
ctggatcctgctcagcattgtatattgcatcacgctgtccccgctggagtgagaagtaat
acgttgatccgcaaaatagagaaatttgaggagacagcaacacctgaacacgtggtacta
agagccactatacctatgatcacctatggcggatacttcctggagtacgtctacaacgtc
aaccatcagaacaagtcttcgtggaccttggaacgagaattcaatcttctatctgcagaa
acatcctcgttaccatga
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integrated database retrieval system
