Solanum pennellii: 107024544
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Entry
107024544 CDS
T04130
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107024544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107024544
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107024544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
AAA_11
Motif
Other DBs
NCBI-GeneID:
107024544
NCBI-ProteinID:
XP_015081025
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All DBs
Position
1:complement(87457767..87461306)
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AA seq
967 aa
AA seq
DB search
MDSGDGSGPKQRNRSCQNGNLTPSSSTCAVNIGKEGVSCGRKRKMVVSEDATKFSPATCE
PIIGRVIVEEIPNNDDDDTDDSEDDNVVIIVEEEESNMLNEKDEEVVSSTSSMKSVEVHT
DSTSSSESESEDVKNEEGEKESNGGLAPELVVESEKQKKGRSYLLRSRSLSKSKKKKLNN
GNGSSSPILLTAEEESKSEEDCDIDDSVKNVVQKDVVQKDRRIGKKILEDSEFMKFVIDS
IINVNDHDKITPFEKKERVPVKETLPLVFRFEDEEPPPPEKEEWEKEVEDLFAEMQMCIL
ESDIGFTNSSASQMQNGDLSDCQMGNHKLVLDEQIGLICKVCPYVHLEIKYIFPSFAQRT
RGRYERKHLGQSPSLLDVGGFRFSDSSEVQDSLINEEGTVWDLVPQSAKSTMHPHQRSGF
EFMWKNVAGDINLERLRQPLSDSKGGCIISHPPGTGKTRLTLVFLQSYLKLFPKSRPVII
APSSLLLNWEAEFQKWEVDIPFHNLNSKDFSLQEDEATVSVFRCLSHAGKRNPHLIRMVK
LGSWVKGNSILGISYDLFRILTGDDGDGYAKPIREILLKYPGLLVLEEGHTARNEQSLVW
KALKKVETEKRIVLSGTPFQNNIKELYNTLCVVSPKFAADLEQKWASLSSSIDKNARALE
ELRDIISPLVHKCSENVKKVSLPGIRDTVIHLKPTDLQKELLRRIPENPSSFYEQNMVSL
ISVHPSLVANRKEFSDLESQLKERGCRLDPDTGVKMKFVVELIRLCGGLKERVIIFSQLL
DPLNLIKEQLSSLFGWTLGREILYMDGKLDVKQRQISINSLNDRKSDVKVLLASIKACSE
GISLIGASRVVLLDVLWNPSVEEQAISRAYRNGQTKFVHVYCPVTSKWEVDKIEQQTRKK
YHSDVLLSRNHEAKMDPSCSESEDTILESMFEHEGLRHIFEKLSHAPRVLPPTTCLDSCN
QPPKPSS
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggactcaggggatggctctggtccaaaacagaggaacaggtcatgtcaaaatggtaat
cttactccgtcttcttcgacttgtgctgtgaatattggaaaagagggtgtgagttgtggg
aggaaaagaaaaatggtggtttctgaagatgcaacaaagttcagtccagcaacttgtgag
cctatcattggacgggttatcgttgaggaaatacctaataatgatgatgatgatacggat
gattcggaggatgataatgttgttatcattgtagaggaggaagagagtaatatgttgaat
gaaaaagatgaggaggttgtttcatctacctcaagcatgaagtcggtggaagtgcatact
gatagcacctcatcttctgagtctgaatcagaagatgtaaagaatgaagaaggagaaaaa
gagtcgaatggggggttagcacctgagcttgttgttgagagtgaaaagcagaagaaaggc
agatcatatcttcttcgttcacgttcactttctaagtccaaaaagaagaagttgaacaac
ggaaatggtagtagcagcccaattcttcttactgctgaggaggagtctaaatctgaagaa
gattgcgacattgatgactcggtgaagaatgttgttcagaaggatgtcgttcaaaaggac
aggaggattggaaaaaagattcttgaagattcggaatttatgaaatttgttattgattcc
atcataaatgttaatgatcatgataaaattactccttttgaaaagaaggaacgggttcct
gtcaaggaaacacttcctttagtatttcggtttgaagacgaggaacctcctccccctgag
aaagaagaatgggaaaaggaagttgaagatctttttgctgaaatgcagatgtgtatctta
gagtcagatattggctttacaaattcatccgcttcgcagatgcagaatggagatttaagt
gactgtcagatggggaaccacaaacttgttctagatgaacaaattgggctcatctgtaaa
gtttgtccctatgtgcatttggagatcaagtacatcttcccttcttttgctcaaagaact
cgagggagatatgaaagaaaacatttaggacaatcgccgtcactcttggatgttggtggc
ttcagattctctgattcttctgaagtccaagattctctgattaatgaagaaggaactgtg
tgggatttagttccacaaagtgccaaatcaaccatgcatcctcatcaacgtagtggattt
gaatttatgtggaaaaacgttgctggagatataaatctcgagaggctgagacagccccta
tctgatagcaaaggaggatgcataatctcacatccacctggaaccgggaaaacccgtctc
accctagtatttcttcagtcgtatttgaagctgtttccaaagtctcgacctgtaatcata
gctccttccagcttgctgcttaactgggaagctgagttccagaaatgggaggtggacatt
cccttccacaacttgaacagcaaagatttctctttacaggaagatgaagctacagtgagt
gtgtttcgctgtttatcccatgcgggaaagagaaatccacaccttatacgaatggtgaag
ctgggatcctgggttaaaggtaatagcattttggggatcagttatgatttgttcaggatt
cttaccggagatgatggagacggttacgctaagccgattagagaaatccttcttaaatat
cctggtcttctggtacttgaagaagggcacactgctcggaatgagcaaagccttgtctgg
aaagctttgaaaaaggttgaaacagagaagcgcatagttttgtctggaactcctttccag
aataacatcaaggagttatacaacactctctgcgtcgtcagtccaaagtttgctgcagat
ttggagcagaaatgggcttctcttagcagttccatcgacaagaatgcccgagcattggaa
gagcttagggacattatttcaccacttgtccataagtgtagtgaaaatgtaaagaaggta
agccttccgggtataagggacactgtaattcacctgaaacccacagatttgcagaaggag
ttgcttagaaggattcctgagaatccaagctccttttatgaacaaaatatggtgtctctt
atctctgttcatccttcattagtggccaataggaaggagttctctgacttagaaagtcag
ctaaaagagagaggttgtcggttggatccagataccggagtaaaaatgaaatttgttgtt
gagcttatcagactttgcggtgggctgaaggagagggttataatatttagccaactactt
gatcctctaaacctgatcaaggagcaactcagttctctctttggatggactttaggtcgg
gagattctctacatggatgggaagcttgatgtgaagcagcggcagatatctataaattct
cttaatgaccgtaagagtgatgtaaaagtgctgcttgcatccataaaagcctgttcagaa
ggaataagtctgataggggcctcaagagtggttttgcttgacgttctctggaatccctca
gtagaagagcaagccatcagtcgagcttacaggaatgggcagaccaaatttgtgcatgtt
tactgtccagtaacatcaaaatgggaggttgacaagattgaacagcagacgagaaagaag
taccattcagatgttcttttgtctaggaatcatgaagccaagatggatccttcatgttct
gagtcagaggataccatactagaatccatgtttgagcatgagggcctccgtcatattttc
gaaaagctctctcatgcaccacgtgtgctgccgcctactacatgccttgattcttgtaac
caacctccaaaaccaagcagttag
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