Solanum pennellii: 107025807
Help
Entry
107025807 CDS
T04130
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107025807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107025807
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107025807
mRNA degradation factors
5'-3' decay
Decapping complex
107025807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WDR55
Beta-prop_EML_2
DUF6124
Beta-prop_Vps41
GerPC
Motif
Other DBs
NCBI-GeneID:
107025807
NCBI-ProteinID:
XP_015082036
LinkDB
All DBs
Position
7:78738089..78747511
Genome browser
AA seq
1405 aa
AA seq
DB search
MASSPGNPNQPGGTGSGPFDIHKFFKPSTPTNPNPQNPIISSHYPSPNASYPPPTPGAGA
GVGGVYPYQTQTTTPFRHHPQFTHNLPQYSTPHDTQLMHQQRSMSFPTPPLQPPPPTSSP
HQFPNPNPGATLMALLSPQPSTSEVQIQSTMPMPPIQPTSSGSELSDFSSGPNVGVAHSG
PGPMRMPSSKLPKGRHLNGDHIVYDIDVRFPSEVQPQLEVTPITKYGSDPGLVLGRQIAV
NKTYICYGLKLGAIRVLNINTALRSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYIWK
ITEGPDEEEKPQITGRIVIAIHIVGEGESVHPRVCWHCHKQEILVVGIGKRILKIDTTKV
GKGAVFSADEPLRCPVDKLVDGVQLIGTHDGEVTDLSMCQWMTTRLVSASVDGTIKIWDD
RNPLPIAVLRPHDGHPVSSVTFLASPHSPEHVVLITGGPLNREIRIWALAGGEGFLLQSD
DESWRCTQTLELKSSAEANVEEAFFNQVVALSQAGLLLLANAKKNAIYAVHLEYGPNPKA
TRMDYIAGFTVTMPILSFTGTSGLLPHGEQIVQVYCVQTQAIQQYALDLSQCLPPPTESV
VFERTESGVSRDSANIEGFAPVDPPGSKQQEIPLSSSAPKSAVHDIGSEISQTARYLTSA
APTESTTSQEFASSIPETKSSILPSVTSDNDIAPSASPPPLSPKLSRNLSGFRGPSNSFG
ADTFDNDQVGSQKVVDYPVDPQKDGTPPILSDIASLDDEHKTSGDDVPSGISHPVKFKHP
THLVTPSEILMARSSSEVSIVNEQKSVSEMNVLDAVTNNDTRTVEMEVKVGGEAKFSQKI
DMGSQDLHSFGSENKEKVFCSQVSDLGLEMARECRTLSPETYTVEESRQFDGVSGSEGPS
QPSVTEDHDSAKDISEKDLDSTMSVTVHQPPAPSVKGKKQKGKNSQVSGPSSASPSAFNS
TDSPNEAVVSSSTPSMGSAFSQILSMREMLNQVLTMQKETQKQMEVMVAVPVTKEGRRLE
AALGRSMEKSVKANSDALWARLQEESAKQEKSLRDRTQQITNLISNCLNKDMPGLMEKLM
KKELAAVGQAVARSITPTIEKTISSAILEAFQKGVGDKAVNQLEKAVNSKIEATVARQIQ
AQFQTSGKQALQETLKSTLEVSVIPAFEMSCKAMFEQVNSTFQKGIADHTVAAQQQFESV
HSPLAIALRDAINSASAMTQTLSGELADSQRQLLALAVSGANSQSANPLNHMNNGSLLHE
KIETPPDPTKEISRQLGEHKYEEAFTAALQMSDVSIVSWLCSQVDLAGILSLNPLPLSQG
VLLSLLQQLSCGISSETVQKLSWMRDVLSAINPNDPLIVVHVRPIFEQVYQMLVQRRNAA
TTPPAELSIIRLLVHVINSMMMAVK
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcctggtaatccgaaccaaccaggtggtactggttcaggaccatttgat
atacacaaattcttcaaaccctcaaccccaacaaaccctaatccccaaaaccctataatt
tcatcccattatccatctccaaacgcttcatacccaccacccacccccggagccggtgct
ggagtcggtggggtttacccttaccaaactcagactacaaccccttttcgtcatcaccct
caattcactcacaacttgccgcaatacagtacaccacatgatacccagttaatgcatcag
cagagatccatgtctttccccactccaccgcttcaaccaccaccacccactagtagtcct
catcaattccctaaccctaatcctggtgctacgcttatggcactgttgagtcctcaaccg
tctacttcggaagttcagatacagtccactatgcctatgcctcctatacaacctacctct
tcggggtctgagctttcagatttttcctctggaccgaatgttggtgttgctcattcgggt
ccgggaccaatgagaatgccgagcagtaaattacctaaagggagacatttgaatggcgat
catattgtttatgacatagatgttaggtttcctagtgaggtgcagccacagctggaggtt
actcctattactaagtatggttcggatcctggtcttgtattaggccggcaaattgcagtt
aacaaaacctatatatgttacggattgaaattgggggctattcgggttcttaacattaat
actgcattgagatcattgcttaaaggtcttgcacagagggtcacggacatggctttcttt
gcagaggatgttcatctcttggctagtgcgagtgttgatggccgggtttatatatggaaa
attactgaaggaccagatgaagaagagaaaccacaaattacaggaaggattgtcattgct
attcatattgttggtgaaggggaatctgttcacccacgtgtttgttggcattgtcataaa
caagaaattcttgtggttggaatcgggaaacgcattttgaaaattgataccactaaagtg
ggaaaaggtgcagtattttcagctgatgaacctctcaggtgtcctgttgacaagttggtt
gatggggtacaacttattggtacccatgatggagaagtgactgatttatcaatgtgccag
tggatgaccactcgtttggtatctgcatcagtggatggcacgataaagatatgggatgac
cgtaatccacttccaatcgcagttctcaggcctcatgatggtcatcctgttagttctgta
accttcttggcttccccacacagcccagaacacgtcgtactcatcactgggggtcctctt
aatcgggaaataaggatatgggcattagcgggtggagaaggctttttgcttcagagtgat
gatgagtcatggcgctgtacacagacattggagctgaagagttcagctgaggctaatgtc
gaagaggcattttttaaccaagttgtagccttgtctcaagcaggtctgctcctactagct
aatgcaaaaaagaatgctatatatgctgtgcatctagagtatggcccgaatccgaaggct
acccggatggattacatagcaggatttacagtcaccatgccaattttgagcttcactggg
acgagtggcctattgccccatggtgaacagattgtgcaggtgtattgtgtacagacacag
gccattcagcagtatgccttggacctgtcccaatgcttaccacctccaacagagagtgtg
gttttcgaaaggacagaatctggcgtttctcgcgattctgcaaacattgaaggatttgct
cctgttgaccccccaggaagtaaacagcaggaaattcctttatctagttcagcacctaaa
tcagcagtacatgacattggctctgagatttcacaaacagctagatatcttacaagtgct
gcacctactgaatcgaccacctctcaagaatttgcttcctccattccagaaactaaatcg
tctattttgcccagtgtaactagtgataatgatattgcccccagtgcatcacctcctcct
ttgagtcctaaattgtctcgaaacttatctggttttagaggtccgtcgaacagctttggg
gcagacacctttgataatgaccaagttggaagtcaaaaagttgttgattatccagtagat
cctcaaaaggatggcacgcccccaatcttgtcagatattgcttccttggacgatgaacat
aaaacgtcaggggatgatgttccctctggtatcagtcatcctgtaaagttcaagcaccca
actcatttggtgactccttcagagatattgatggctagatcatcctctgaggttagcatt
gttaatgagcagaaaagtgtgtcagaaatgaatgttctggatgctgtaactaacaatgac
acccgcactgtagagatggaggttaaagttggtggtgaagcaaaatttagtcaaaaaatt
gatatgggctctcaagaccttcattcttttgggtctgaaaataaagagaaggttttttgc
tctcaagtatctgatcttggattagaaatggctagagaatgtcgcaccttatctcccgag
acctatactgtagaggaatctaggcagtttgatggggttagtggaagtgagggaccatct
caaccttcagttacggaagatcatgactctgcaaaggacatctctgaaaaagatttagac
tcaactatgtcagtcactgttcatcaaccaccagctcccagtgtaaaagggaaaaagcaa
aaggggaagaattctcaagtgtctggcccatcttcagcatcgcctagtgcttttaattca
acagattctccaaatgaggctgttgtcagctcaagtaccccttctatgggaagtgctttc
tcacaaattttgtccatgcgtgagatgcttaatcaggttctgactatgcaaaaagaaaca
caaaagcagatggaagtgatggtcgctgttccagtgaccaaagaaggaagaagacttgaa
gctgccttgggaaggagcatggaaaaatctgtcaaggccaattctgatgctttatgggct
cgtttacaagaagagagtgcaaaacaggagaagtctctccgtgatcgtacacaacaaata
accaatttgatctctaactgcttaaataaggacatgccaggtctgatggaaaaattaatg
aagaaagagctagcagctgttggacaagctgtagcacgcagcattacccctactatagag
aaaacaatatcatctgcaattttagaggccttccagaaaggagttggtgacaaggcagtg
aaccaactagagaaagcagtaaactccaaaattgaagctactgtagctagacaaatccaa
gcacagttccaaacctctggcaagcaagctcttcaggaaacactgaaatctactctggaa
gtctcagtgatccctgccttcgagatgtcatgcaaggcaatgtttgagcaagtaaattca
acatttcagaaaggcattgctgaccacacagttgctgcacaacagcaatttgagtccgtg
cattcacctttggcaatcgctctgagagatgccatcaattcagcatcggcaatgacacag
acactgagcggagagcttgctgatagtcagagacagttgcttgctcttgcagtttctgga
gcaaattcccaatcagcaaatccactcaaccacatgaataatggatcattgctacatgaa
aagattgagacacctccagatccaaccaaagagatatctagacagttaggggagcacaag
tatgaggaagcattcactgcagcattacaaatgagtgatgtgtcaattgtgtcatggtta
tgctctcaggttgatttggctgggattttatcgttgaatcccctccctctgagccaagga
gtgctcctttcacttcttcagcagttatcgtgtggtattagctcagagacggtccaaaaa
ctctcttggatgagggatgtgctatctgccatcaatccaaatgacccactgattgttgtg
catgttcggcccatctttgagcaagtatatcagatgttagtacaacgcagaaacgctgct
accactcctcctgctgaactttcaatcattcggcttcttgtgcatgttatcaattcgatg
atgatggctgttaaatga
DBGET
integrated database retrieval system
