Solanum pennellii: 107025827
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Entry
107025827 CDS
T04130
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107025827
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spen04147
]
107025827
Membrane trafficking [BR:
spen04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
107025827
Exosome [BR:
spen04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107025827
Exosomal proteins of bladder cancer cells
107025827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WD_LRWD1
Fis1_TPR_C
zf-CHCC
Aa-Ago_N
Motif
Other DBs
NCBI-GeneID:
107025827
NCBI-ProteinID:
XP_015082074
LinkDB
All DBs
Position
7:43076609..43085765
Genome browser
AA seq
1219 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTQRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADELLR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHPRQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILASHP
EMNLLAAGHDSGMIVFKLERERPAFSVSSDSLFYVKDRFLRVYEYSTQKDTQLIPIRRPG
SNNVNQGPRTLSYSPTENAVLICSDTDGGSYELYIVPKDSHGRGDTVQDAKRGTGGSAVF
VARNRFAVLEKSTNQVLVKNLKNEIVKKSLLPMATDAIFYAGTGNLLCRAEDRVVIFDLQ
QRIILGDLQTSFIRYVVWSPDMESVALISKHSIVIADKKLVHRCTLHETIRVKSGAWDDN
GVFIYTTLTHIKYCLPNGDCGIVKTLDVPVYITKIYGNTIFCLDRDGKNRPIIIDSTEYV
FKLCLLRKRYDQVMSMIRNSELCGQAMISYLQQKGFPEVALHFVKDERTRFNLALESGNI
EIALESAKKIDEKDHWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFLYLITGNVEKLSK
MMKIAEVKNEVMGQFHDALYLGDVRERVKILENAGHLPLAYITATVHGLNDTAERLAEEV
GDNVPSLPKGKKSSMLLPPTPILGGGDWPLLMVTKGIFEGGLDIAGKGGQDEYEEATDAD
WGESLDIGEVENLQNGDISMVLGDEEGQEGNDEEEGGWDLEDLDLPPDADTPKTTSNARS
SVFVTPTPGMPVSQIWVQKSSLAAEHAAAGNFDTAMRLLSRQLGIRNFSPLKSLFIDLHV
GSHTHLLAFSSAPVISVAIERGWSESASPNVRGPPALIFSFAQLEEKLKASYKATTGGKF
SDALRLFLSILHTIPLIVVESRREVDEVKELIVIVKEYVLGLQMELKRKELKDNPIRQQE
LAAYFTHCNLQLPHLRLALQNAMSICYKAGNLSSAANFARRLLETNPTNESQARTARQVL
QAAEKNMRDVTQLNYDFRNPFTVCGATYVPIYRGQKDVTCPYCGTHFVLSQQGGLCTVCD
LAVVGADASGLLCSASQIR
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagtttgagaccaagagtaatagagtgaaaggtttgagttttcacacacaa
aggccatggatcttagccagtcttcatagtggggttattcagctatgggattaccgtatg
ggaactctcattgatcgatttgatgagcacgatggccctgttcgcggtgtccatttccac
aaatctcagcctctgtttgtttctggaggagatgattacaaaattaaggtttggaactac
aagctgcataggtgcttgtttaccctgcttggacatcttgattatatccgaactgttcaa
tttcaccacgaatatccatggattgttagtgcaagtgatgaccagactattcgaatatgg
aactggcagtctcgtacttgtatttctgtcttgactggccacaatcattatgtaatgtgt
gcgtcatttcatcccaaagaggacttggttgtctctgcttccttggatcagactgttcgt
gtctgggatattggtgccctaagaaagaaaaccgtttctcctgctgatgaactcttgcgg
ttgagtcagatgaatactgacttctttggtggagtggatgctgtggtgaagtatgtcttg
gagggtcatgatagaggggttaactgggcatcatttcatcctacactcccccttatagtt
tctggtgcagatgatcgccaagtgaaaatttggcggatgaatgatacaaaagcttgggag
gtggacacgttgagaggacacatgaacaatgtttcatgcgttctattccatccaaggcaa
gatattattgtttcaaattcagaggataagagcatccgagtgtgggatgcaacaaaaagg
actggtcttcagactttccgcagggaacatgatagattttggatccttgcatctcatcca
gagatgaatcttctagcagctggtcatgacagtgggatgatagtattcaagttggagaga
gaacggcctgcattttctgtgagcagtgattctttattttatgtaaaggatcgctttctc
cgtgtatatgagtattcaacccagaaggacacacagttgataccaattagaaggcccggc
tcaaacaatgtgaatcaaggtccacgaactctttcatatagtccaacggaaaatgctgtc
ttgatatgttcagacacagatggtggttcctatgaactttacattgtacccaaagatagt
catggtaggggtgatactgttcaagatgcaaaaagaggaaccggaggatcagctgtgttc
gttgcccgaaacaggtttgcggtgcttgagaagagcactaatcaagtcctggtaaaaaat
ctcaagaatgaaattgtcaagaaaagccttcttcctatggcaactgatgcaatattttat
gctggcactggaaacttactatgtagggcagaggatagagttgtcatttttgatctccag
cagagaattattcttggagatcttcagacttcttttatcaggtatgttgtttggtcacct
gatatggaaagtgtcgctttgattagcaagcactccatagttatagctgataagaagctt
gtgcaccgttgcacccttcatgagacaattcgtgtcaaaagtggtgcctgggatgacaat
ggagtattcatatataccacacttacccacattaagtactgtctccccaacggggattgt
ggaatcgtcaaaactctagatgttcctgtctacattacaaaaatatatgggaacactatc
ttttgcttggatagagatggcaaaaaccgtcctattattattgattcaactgaatatgta
ttcaagttgtgtctgcttagaaagagatatgaccaagttatgagtatgatcagaaactca
gagctctgtggtcaggcgatgatttcatatttgcagcagaagggttttccagaagttgcc
cttcattttgtgaaggacgagcgcactcgtttcaacttagcacttgaaagtgggaatatt
gagatagctcttgaatctgctaagaagattgacgaaaaagatcattggtataggcttggc
gtggaagcccttaggcagggcaatgcaggtattgttgaatatgcctaccaaaagacaaag
aattttgagaggctctctttcctatatctaataacaggaaatgtggagaagttatctaaa
atgatgaaaattgctgaggtcaaaaatgaagtaatgggtcagttccatgatgccttgtac
ctcggtgatgtccgcgagcgtgttaaaattttggaaaatgctggtcatctgccccttgcg
tacatcacagctactgtccatgggctcaatgataccgctgagcgtcttgcggaggaagtg
ggggataatgttccatcattgccaaaggggaagaaatcttcaatgttgcttcccccaact
cccatcttgggtggtggagactggcctttgctgatggtaacgaaagggatatttgaaggt
ggtctggatattgcaggcaagggaggacaagacgaatatgaagaggctacggatgcagac
tggggtgagtcattggacatcggtgaggtggaaaatctacagaatggggacatcagtatg
gtgcttggtgatgaggaaggacaagaaggaaatgatgaggaggagggaggatgggatctt
gaggatctggatctgcctcctgatgcagacacacctaagactacttccaatgctcgttct
tctgtgtttgtcaccccaacacctggcatgcctgtcagccagatttgggtccaaaaatca
tctctagctgctgaacatgcagctgctggaaattttgatactgctatgcggttgttgagt
agacaactagggattaggaacttctctcctttaaaatcattgtttattgatcttcatgtg
ggtagccacactcatctgcttgccttctcctcggcgccggtcatctccgtggcaattgag
agaggttggagtgagtcagctagtcctaatgttcgaggtccacctgctcttatattcagt
tttgctcagttggaggaaaaacttaaagcttcttataaagcgactactggtggaaaattt
tctgatgcacttagactattcctgagcatccttcacaccattcctctgattgtggttgag
tcgagacgagaagtggatgaagtaaaggaattgattgtcatagtgaaagagtatgttttg
ggtttgcagatggagcttaagaggaaggaattgaaagacaatcctattcgccagcaggaa
ctggcagcctatttcactcactgtaatctgcagcttcctcacttgagactggcgttacag
aatgctatgtctatctgctacaaggccggaaatcttagctcagcagcgaactttgctaga
agactcttggagaccaatcccaccaatgaaagccaagccagaacagcccgccaggttctg
caagcagctgagaaaaatatgcgagatgttacacagttgaattatgatttcagaaatcct
tttacagtgtgtggggcaacatatgtcccgatataccggggtcagaaggatgtcacttgt
ccttactgtggtactcattttgtactgtctcagcaaggggggctttgtactgtttgtgat
cttgcagttgttggagctgatgcctctggtttgctttgctcggcatcacagatcaggtga
DBGET
integrated database retrieval system
