Solanum pennellii: 107026009
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Entry
107026009 CDS
T04130
Name
(RefSeq) protein argonaute 16-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107026009
03036 Chromosome and associated proteins [BR:
spen03036
]
107026009
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107026009
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107026009
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
107026009
microRNA pathway
RISC loading complex
107026009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoN
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
107026009
NCBI-ProteinID:
XP_015082313
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Position
7:complement(70359362..70371816)
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AA seq
903 aa
AA seq
DB search
MENSEGRESCFSPVEEPPPVIMSNAEPERVDQPKRTIMMRAGDGTSGREISLLANHLKVS
IKCPDEIFYHYSVSITSDEKRAVNSKVIRRKIVDKLHETYSSEFAGKKFAYDGEKNLYTV
GPLPRNRLEFTVVVEESSARQASESPSDNGSLNHSIKRFKHSLHSKAFLVEIDYAAKIPL
RSVDLALQGADPENVQDALRVLDIILRQKAANRGCLLVRQSFFHDDSRNFTDVGGGVMSC
RGFHSSFRPTDGGLTLNMDVSTTMILSPGPVIDFLLANQNVKEPRYIDWARAKRMLKNMR
VKAKHDNREFKIIGLTDKPCNQQLFSMKVKNGGSPDDGGETLDITVYQYFTKHRNIELSS
SVYMPCLDVGKPKRPNYLPLELCYLVSLQRYTKALSSVQRASLVEKSRQKPRERIKVITD
AVRDYSYDDDPLLVACGISIEKQLIQMNGRVLEAPKLKVGNGEEVTPCDGRWNFKNKHLF
NPARIERWAVVNFSASCDTSHLSRELISCGRSKGIHFERPHTLIEEDPQYRRAGPVVRVE
QMFEEIIARLPGHPDFLLCVLPERKNSELYGPWKKKSLTDLGIVTQCISPLKITDRYLTN
VLLKINAKLGGTNSLLAMEHTSHLPLIKDTPTMILGMDVSHGSRVQSDIPSIAAVVGSLY
WPLISKYKAVVRSQSPKLEIVESLYKPLPNGDDEGIMRELLLDFYRTSNGHKPAQIIVFR
DGVSESQFSQVLNLELDQMIKAYKNLGEGGNPKFTLIVAQKNHHTKLFQANAVDNVPPGT
VVDTNIVHPRNNDFFMCAHAGMIGTTKPAHYHVLLDEIGFAPDVLQNLIHSLSYVYQRST
SATSIVAPVRYAHLAAQQFGQFDKYEDHSETLSEQGSVKSIGTTPVTELPRLHKNVSDSM
FFC
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatagtgagggaagagagagttgtttctcacctgtggaagaaccgccaccagtt
ataatgtcaaatgcagagccagagagagttgatcagcccaagcgtactataatgatgagg
gctggggatggaacatctggacgagagatttctttgcttgcaaaccacctaaaagtttct
atcaagtgtcctgatgaaatattttaccattatagtgtctctataacttctgatgaaaag
agggccgttaacagcaaggtgattagaagaaaaattgtagataaacttcacgaaacatac
tcatctgaatttgctgggaagaaatttgcttatgatggagagaagaatttgtacacagtg
ggacctctaccacgcaacagactggaattcacggtggttgttgaggagtctagtgcacgg
caggctagtgagagtccctcagataatggaagcctcaatcactccattaaaaggtttaag
cattctctacattcaaaggccttcctggtggagatcgactatgcagctaaaataccatta
aggtctgttgatcttgcccttcaaggagctgatccagaaaatgttcaagatgcattgagg
gttctagatattatattgcgacaaaaagctgctaatagaggatgcctcttggttagacag
tcattttttcatgatgactcaaggaacttcacagatgttggagggggtgtaatgagttgc
agggggtttcattccagctttcgtccaactgatggtggcttgaccttgaacatggatgtg
tctacaactatgatcctatcacctggacctgtcattgattttttgcttgctaaccagaat
gtaaaagagcctcgttatattgattgggcaagagcaaaaagaatgttgaagaatatgaga
gttaaagctaagcacgacaacagggaatttaaaattatcggtttgactgacaaaccttgc
aatcaacagttattttctatgaaggtcaaaaatggtggtagtccagatgatggaggagag
accctagatataactgtttatcagtatttcactaaacatcgtaacatagaactttcatcc
tcagtttatatgccatgtctggacgttggaaaaccaaaacgaccaaactatctgccactg
gagctgtgttatttggtctcccttcaaagatacacaaaagcattatcatcggtccagagg
gcatctttagttgaaaaatcaaggcagaagcctcgtgaaagaattaaagttataacagat
gctgtgagggactacagctatgacgatgatccccttcttgttgcttgtggaatctcaata
gaaaagcagttgattcaaatgaacggcagggtccttgaagccccgaagttgaaggttggt
aacggcgaagaggtcactccctgtgacggcaggtggaatttcaagaacaagcatcttttc
aaccctgcacgaattgaacgctgggcagtggtcaacttctctgccagttgtgatacaagt
cacctttcaagggagcttattagttgtggaaggagcaaaggcattcattttgagcgccca
catacactcattgaggaagatccccagtataggcgagctgggcctgtagttcgagtagaa
cagatgtttgaagagataatagctagactgcctggccatcctgatttcctcctctgtgtc
ttgccagagcggaaaaactcagagttatatggaccatggaagaaaaaaagtttgactgac
ttgggaattgttactcaatgtatctctccgttaaagatcactgatcgatatctaacaaat
gtgcttctcaaaattaatgcaaagcttggagggaccaattcactgttggctatggaacat
acctctcatctaccgcttattaaggacactccaacaatgatcctgggaatggacgtctct
catggatctcgtgttcaatcagatattccatcaattgctgcggttgtgggatccttatac
tggccactaatatccaagtataaggcagttgtgcgcagtcaatctccaaaattggaaatt
gtagaatccttatacaagcctttaccaaatggagacgatgaaggaatcatgagagaacta
cttctggacttctataggacaagtaacgggcataagccagctcaaattattgtcttcagg
gatggcgtcagcgaatcacagtttagtcaagttctgaaccttgagctagatcaaatgatc
aaggcatacaagaatcttggtgagggcggcaaccctaagttcaccttgatcgtggctcaa
aagaatcaccatacaaaactatttcaagctaatgcagttgataatgtaccaccaggtact
gttgtagacacaaatattgtgcatcctagaaataatgattttttcatgtgtgcacatgcg
gggatgattggaacaactaaacctgcacattatcatgtattgcttgatgagattggtttc
gcacctgatgtcctgcaaaatctcatacattctttatcatatgtgtaccaaaggagtacc
agcgcgacctctattgtggctcctgtgcgttatgcacacctagcagcacaacaattcggg
cagtttgataagtacgaggaccactccgaaactttgtcagaacagggaagtgtcaaatca
attgggactaccccggtaaccgaactgcccaggctgcacaagaatgtcagcgactcaatg
tttttctgttga
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