Solanum pennellii: 107026067
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Entry
107026067 CDS
T04130
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
spen
Solanum pennellii
Pathway
spen03030
DNA replication
spen03410
Base excision repair
spen03420
Nucleotide excision repair
spen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107026067
03410 Base excision repair
107026067
03420 Nucleotide excision repair
107026067
03430 Mismatch repair
107026067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spen03032
]
107026067
03400 DNA repair and recombination proteins [BR:
spen03400
]
107026067
DNA replication proteins [BR:
spen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107026067
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107026067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
Rad17
RCF1-5-like_lid
AAA_30
AAA_22
AAA_19
AAA_5
BRCT_2
AAA_assoc_2
RuvB_N
AAA_14
AAA_16
DNAX_ATPase_lid
nSTAND3
Gp44_lid
AAA_18
NTPase_1
PTHB1_hp
RsgA_GTPase
KTI12
Sigma54_activ_2
Bro-N
SurA_N
Motif
Other DBs
NCBI-GeneID:
107026067
NCBI-ProteinID:
XP_015082395
LinkDB
All DBs
Position
7:complement(944432..957636)
Genome browser
AA seq
1012 aa
AA seq
DB search
MSDIRKWFMKQHDKGTGNGSMSKNSAAEKPSPTSPKPENLVQEGQETANRRKTSKYFATD
KVKAKEEKVEEVSAKRKAPNAAGISSAPAAKRIHKAEDEDDFVPVVSAMGSRDVTPSKKS
VSGSGRGSAQKNVISDDSDDDLKNKKSDLKSAGRGLGGRAAKTSGKGVPLDESEDDASAV
KDNKSGGRGRGGKGPSAAPSGGRGRGGGGRGGFMNFGERKDPPHKGEKEVPEGAPYCLAG
LTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTTYLLCDEDVEGRKSSKAKELGTAF
LTEDGLFELIRSSKKSKSATQPESKKSVDTIVSSGKRNSQNTSDGTGSTATKILAAKQLA
PSASPAKISGSPAKISASPAKKKTQAKESLLPWTEKYRPKAIVDIIGNKSLVEQIQRWLE
SWDEHFLKASSKGKGKKQADSGAKKAVLLSGMPGIGKTTSAKVVSQLLGFQTIEVNASDS
RGKADSKIEKGIGGSTANSIKELVSNESLSANVGRSHHQKTVLIMDEVDGMSAGDRGGVA
DLIASIKISKIPIICICNDRYSQKLKSLVNYCLPIVFRKPTKQQMAKRLNQVANAEGIQV
NEIALEELAERVGGDMRMALNQLQYMSLSKSVIQYDDIRRRLLSSSKDEDISPFKAVEKL
FDFNSKNLKIDQRIDLSMSDPDLVPLLVQENYLNYKPSSAGKDDNDLKRMSLIAHAADSI
ANSDLINVQIRRYQQWQLSPAGCLSSCIIPASLLHGQRQTLEQGERNFNRFGGWLGKNST
MGKNYRILEELHVHLLASRESYLGRANLRLDYFSLLGKKLTDPLKVLPKDEAVENVVAFM
DSYSISQEDFDNIVEISKFKGQPNLLDGVQPAVKAALTKAYNKGSKSRVIRTADLITLPG
IKKAPKKRVAAMLEPLDEGVAEENDETLAEDEENSSDTEDIDVGKKLQSDLQSLSSRGIE
VNMDLKGTGSSGSKKASAGRGRGRGSSNSSATAESSGKRGGRGSGAAAKRKR
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatatcaggaaatggttcatgaagcagcatgacaaaggcacgggtaatgggagc
atgtccaagaatagtgcagcagaaaagccttctcccactagtccaaagccagaaaacctg
gtacaagaaggacaagagactgccaacagaaggaaaactagtaaatattttgctacagac
aaggttaaggcaaaagaagaaaaagttgaggaagtgtcagcaaaaagaaaagctccaaat
gctgctggaatttcatcagcaccagctgcaaaaagaattcataaagctgaggatgaagat
gactttgtaccagtcgtatcggcaatgggatccagagatgtcactcccagcaaaaagtcg
gtaagtggctctggaaggggatccgcgcagaaaaatgtgatcagtgatgatagtgatgat
gatcttaagaacaaaaaatctgatctcaaatctgctggaagagggctgggtggacgggca
gctaagaccagcggaaagggtgttcctcttgatgaaagtgaagatgatgcttcagctgtc
aaggacaacaaatctggtggacgagggcgtggtggtaaaggaccatctgcagcaccaagc
ggtggacgaggtagaggtggtggaggacggggaggtttcatgaactttggtgaaagaaaa
gatcctcctcacaagggggaaaaggaagttcctgaaggtgccccatactgtttagctggt
ttgacttttgtaattagtggaactctcgacagtttagaaagagaagaagctgaggatttg
attaaacgccatggtggtcgtgtcacaggatctgttagcaagaaaacaacttatctttta
tgtgatgaagacgtcgagggacggaaatcctctaaagccaaggagctcggaactgcattt
ctcactgaggatggtttgtttgaattgatccggtcatcaaaaaaatcaaaatcagctaca
caacccgagtcaaagaaatctgtggacaccattgtttcttctggaaagagaaattcacaa
aatacaagtgatggaacaggaagcactgccacaaagattctagctgccaaacaattggca
cctagtgcatctcctgccaaaattagtggatctcctgctaaaattagtgcatctcctgcc
aagaagaaaacccaagctaaagagtctttactaccatggacagaaaaatacagacccaaa
gctattgtagacataatagggaacaagtcactggtggagcagattcagcgttggctagag
agctgggatgagcattttctaaaggcatctagtaagggtaaggggaaaaaacaggctgac
tctggtgctaaaaaagcagttctgttgagtggtatgccgggtatagggaagactacatca
gcaaaagtggttagtcagttgctgggatttcaaaccatcgaggtaaatgctagtgatagt
cgtggaaaggctgactcaaaaattgagaaaggaataggcggaagtactgctaattccata
aaagaacttgttagcaatgaatctctaagcgccaatgttggcagatcacaccatcagaag
actgttctgattatggacgaggttgatggcatgtctgctggagatagaggtggtgttgcc
gatcttattgctagcatcaagatctcgaaaattcctattatctgcatttgcaatgatcgc
tacagtcagaaattgaagagccttgtcaattattgcctaccaattgtcttccgtaaacca
actaagcagcagatggcaaagaggttaaatcaagtagcaaatgctgaaggcattcaagtc
aatgagattgctcttgaggaattggcagaacgtgttggaggagatatgcgtatggctcta
aatcaattgcaatacatgagtctctctaagtctgtcatccaatacgatgacataagacgc
cgccttctaagcagttcaaaggatgaagatatctcaccattcaaagctgtagaaaagctg
tttgattttaattccaagaacttgaaaatagatcaaagaattgacctaagtatgagcgac
ccagatcttgtcccacttcttgtccaggagaattatctcaactacaaaccaagttctgct
ggcaaagatgataatgatttaaagcggatgagcctaattgcgcatgctgctgactctatt
gcaaacagtgacttaataaatgtacagattcgaagataccagcaatggcaactttctcca
gctggttgcctttcgtcttgcataattcctgcttctttgttgcacggacagaggcagact
cttgagcagggagagcgcaactttaacaggtttggcggctggctaggaaagaattctaca
atgggaaagaattaccggattctggaggaattgcatgttcacctactcgcatctcgtgaa
tcttatctgggaagggcaaacctgagacttgactacttttctcttcttggaaagaagttg
acagatccattaaaagtgctgcctaaggatgaagctgtagagaatgttgtggctttcatg
gattcttactctataagccaggaggacttcgataatattgtggagatatcaaaattcaag
ggacaaccgaatcttctggatggtgtacagcctgctgtgaaagcggcactgacaaaagca
tacaacaaaggaagcaaatcacgtgttattcgcacagcagatttaattacccttcccgga
attaaaaaagctcctaagaagcgcgttgcagcaatgctggagccactagatgaaggtgta
gctgaagaaaatgatgaaacacttgctgaagatgaagagaattcatcagatacagaagac
atagatgttgggaaaaaattgcagtccgatcttcagagtctcagttcgagagggatcgaa
gtaaacatggacttgaagggtaccgggagttcaggtagcaagaaggcgtctgcagggaga
ggacgaggaagaggaagttctaatagcagtgcaaccgctgaatcctcaggtaagagaggt
ggtcggggttctggagctgctgccaagagaaagaggtga
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