KEGG   Solanum pennellii: 107026158
Entry
107026158         CDS       T04130                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
spen  Solanum pennellii
Pathway
spen03013  Nucleocytoplasmic transport
spen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107026158
  09122 Translation
   03013 Nucleocytoplasmic transport
    107026158
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107026158
   03041 Spliceosome [BR:spen03041]
    107026158
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     107026158
Spliceosome [BR:spen03041]
 Complex C
  Other components
   EJC/TREX
    107026158
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107026158
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd DSE1_N WD40_MABP1-WDR62_2nd Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR75_1st Beta-prop_EML eIF2A Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_DCAF12 WD40_RFWD3 WD40_MABP1-WDR62_1st Tricorn_2nd TRM82_WD Beta-prop_NUP159_NUP214 Beta-prop_IFT122_2nd WDR90_beta-prop_4th Beta-prop_IFT80_2nd PAC11 Beta-prop_WDR41 ASA1 Beta-prop_ACSF4 Beta-prop_Nup120_160 Beta-prop_WDR11_1st WD_LRWD1 DUF7099
Other DBs
NCBI-GeneID: 107026158
NCBI-ProteinID: XP_015082509
UniProt: A0ABM1H9X7
LinkDB
Position
7:complement(78803478..78809137)
AA seq 313 aa
MAETIPFKNLHSREYQGHKKKVHSVAWNCSGTKLASGSVDQTARIWQIEPHGHGKVKDVE
LKGHTDSVDQLCWDPKHAELIATASGDKTVRLWDARSGKCSQQVELSGENINITYKPDGT
HIAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNTGGDMFFLTTGNGTVEVLAYPSL
QAVNTLNAHTAGCYCIAIDPLGRYFAVGSADSLVSLWSIKEMLCLRTFTKLEWPVRTISF
NHTGDYIASASEDLFIDIANVQTGRSVYQIPCRAAMNSVEWNPKHNLLAFAGDDKNKYQA
DEGVFRIFGFESA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggcggaaacaatacccttcaaaaatcttcatagcagagagtaccagggacacaagaag
aaggtgcattcggtggcatggaactgcagtggcacgaaattagcttcaggttctgtggat
caaacagctcgtatttggcaaattgagcctcatggtcatggaaaggtaaaagatgttgaa
ttaaagggtcacaccgacagcgtggaccagttatgttgggatccaaaacatgcagaattg
atagctacagcatctggtgacaagacagttcgattatgggatgcccgtagtgggaaatgc
tcacagcaagttgaactcagtggggaaaatatcaatatcacttacaagcctgatgggaca
catatagctgttgggaacagggatgatgagctaacaatcttggatgttcgcaagtttaaa
cctattcataagcgcaagtttaattatgaggtaaatgagattgcatggaacacgggtggt
gatatgttctttcttacaactggaaatggaactgtggaagtcttagcttatccgtctcta
caagccgttaacacgcttaatgctcacactgctggttgttactgcattgcaattgatcca
ctaggaagatattttgctgttggaagtgctgattcattggtcagcctttggagcattaag
gagatgctatgtcttcgaacatttacaaaactagagtggccagttcggacaataagtttc
aatcacacaggagactacattgcctctgctagtgaagatttgtttattgatattgctaat
gtccaaactggacggtcagtttaccaaattccatgtcgtgctgccatgaacagtgttgaa
tggaatccaaaacacaacttgcttgcctttgccggggatgataagaacaaataccaggct
gatgaaggtgtttttcgcatatttggctttgagagcgcataa

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