Solanum pennellii: 107026326
Help
Entry
107026326 CDS
T04130
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107026326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107026326
03012 Translation factors [BR:
spen03012
]
107026326
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107026326
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107026326
Translation factors [BR:
spen03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107026326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
R3H
OB_NTP_bind
DEAD
HA2_C
Ank_5
HA2_N
ATPase
nSTAND3
Ank_2
AAA_19
AAA_22
AAA_23
ABC_tran
Rad17
PhoH
AAA_7
AAA_16
Sigma54_activat
AAA_11
Motif
Other DBs
NCBI-GeneID:
107026326
NCBI-ProteinID:
XP_015082739
LinkDB
All DBs
Position
7:complement(68490884..68505228)
Genome browser
AA seq
1197 aa
AA seq
DB search
MASTAPSSSGVGKKRQKKGQKQQEVTNVAESTRIRVAQVLEQFRVSNDEVYTFESNLSNR
DRAAVHMLCRKMGMKSKSSGRGDQRRISIFKTKQNTDTMKGKDVLSCFKFSEEAKYALQD
LFTRYPPGDGETNEPVVGKHSKKFDKLRGKKDDMFCKPVMSTSEIAKRVESFASRTEKNP
NMRQITLQRSKLPIASFKDAITSTIESNQVVLISGETGCGKTTQVPQFILDHMWGKGETC
KIVCTQPRRISAISVSERISTERGESVGDTVGYKIRMESRGGKQSSIMFCTNGILLRVLI
TNGSASYNKEAPGKMGKDPISDITHIIVDEIHERDRYSDFMLAILRDLLPSYPNLRLVLM
SATLDAERFSKYFGGCPVIRVPGFTYPVKTFYLEDVLSIVKSTKNNHLDSTSSTVMPEES
ILTEEYKVALDEAINLAFSDDDLDPLLDLISSEGGPKIFNYQHSLSGVTPLMVLAGKGRV
GDICMLLSFGADYHLRANDGKTALDWAEQENQTQVVEIIKEHMEKSSSSCEEQQHLLDKY
LSTVDPELIDDVLIEQLLKKICIDSKDGAILVFLPGWEDINRTRERLRASHYFNDQSKFS
VIPLHSMVPSVEQKKVFRHPPPGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKSYDPY
NNVSTLQSSWVSKASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRIPIEELC
LQVKLLNPDCKIEEFLQKTLDPPVYETIRNAIIVLQDIGALSFDEKLTELGERLGSLPVH
PLTSKMLLISILLNCLDPALTMACASDYRDPFTLPMLPNEKKKAAAAKAELASWYGGRSD
QLAVVAAFEGWKSAKETGQESRFCSKYFLSSGTMHMLSGMRKQLASELLRNGFIPGDGSS
CNLNAQDPGILHAVLVAGLYPMVGRLLPPLKNNKKSVIETAGGDKVRLSPHSTNFKLSFQ
KFYDQPLIAYDEITRGDGGLLIRNCSVIGPLPLLLLATEIVVAPGNEDDDDDNDDDESDY
EDADEDNGEEGNIKADLSEAHQGEKIMSSPDNTVKVIVDRWIPFESTALDVAQIYCLRER
LAAAILFKVTHPGKVLPEVLAASINAMGCILSYNGMSGISLPHEPVDSLTTMVGATEIGQ
SDPGWNNRMDMNPNIRHQHPNMHQQRGGGIHVPKGSSAHRGTMQRGHSKRKRGNGPY
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacagctccatcatcatctggggttgggaagaagaggcagaagaaaggccaa
aaacaacaagaagttaccaatgttgcagaatccactcggattcgggttgcccaagttctt
gaacagtttcgtgtctctaatgatgaagtatacacatttgaatcaaacctttcaaaccgc
gatagagctgcagttcatatgttatgccggaaaatgggaatgaagtcaaaaagttctggg
cgtggggatcaacgtcgtatatcaattttcaagactaaacagaacacggacacaatgaaa
ggaaaggatgtgctaagttgttttaaattttcggaggaggcaaaatatgctctacaggat
ttatttacgcgatatccacctggtgatggggagacaaatgaaccagtagtcgggaaacac
agtaagaaatttgataaattacgaggaaagaaggatgatatgttctgtaaacctgtgatg
agcacgtctgaaattgcaaaaagggtcgagtcatttgcgtcaagaacagaaaaaaaccca
aacatgagacagattacattacaaaggtctaagcttccaattgcttccttcaaggatgct
attacatcaactatagaatctaatcaggtggtcttgatctctggtgaaactggatgcggg
aaaactacacaggtccctcagtttattttagatcatatgtggggtaaaggtgagacatgt
aaaattgtatgtactcagccacgacgaatttctgccatatcagtttctgagagaatttct
actgaaagaggcgaaagtgttggagatactgttggttacaagatacggatggaaagcaga
ggtggaaagcagtcatcaatcatgttttgtaccaatgggattctacttagggtcctgatt
accaatggaagtgccagctacaacaaggaggctccggggaaaatgggcaaggatcccatt
tctgatataacccacatcattgtggatgaaattcatgagagggatcgctactccgatttc
atgctcgctattctcagggacttgcttccttcatatccaaatttgcgtttggttctgatg
agtgctacactggatgctgaacgtttttcaaaatacttcggtggctgcccagttatccga
gtccctggatttacttatcctgtaaaaacattctatcttgaggatgtactttctattgta
aagtcaactaaaaataatcaccttgactccacctcatccactgtcatgcctgaggaatca
atattaacagaggagtacaaagttgccttagatgaagcaattaatctggctttttcagat
gatgatctggatccccttttggatctaatatcttctgaagggggcccaaagattttcaat
tatcagcattctttgagtggagtgacgccattgatggtgttagctggaaaaggccgcgtt
ggtgacatttgcatgctcctttcttttggtgctgactaccatttacgtgctaatgatggg
aaaactgctctagactgggctgagcaggagaatcagacacaagttgttgaaataattaag
gaacacatggagaaatcatcttccagttgtgaggagcagcaacatttacttgacaaatac
ctatcaacagttgaccctgaactgattgatgatgtccttattgaacaactattaaaaaaa
atatgcatagactcgaaggacggggccatccttgttttccttcctggttgggaggacatt
aacagaacacgagagagattgagagcaagccactatttcaatgatcagtctaagttttca
gtgatccctctccattctatggttccttctgtggagcaaaagaaggtttttagacaccct
cctccaggctgccgcaaaatcgttctttcaactaatattgctgaaactgccattaccatt
gatgatgttgtttatgtaatcgacagtggacgaatgaaagaaaaaagttatgacccttat
aataatgtatcaactcttcaatcttcatgggtctcaaaagcaagtgcaaagcaaagagaa
gggcgtgctgggcggtgccagccagggatttgttatcatctttattcaaaacttcgagca
gcttcattgcctgatttccaggttcctgagattaagaggattcctatagaggaactatgt
cttcaggtcaagcttcttaaccctgattgcaagatagaagaattcctgcagaagacactt
gaccctccggtttatgagaccatacgtaatgcaatcattgttcttcaagatattggggcg
ttgtcatttgatgagaaacttacagagcttggagaaaggctaggatctttaccagttcat
ccgcttacaagcaagatgcttttaatttccatcttattgaactgccttgacccagcattg
actatggcttgcgcttctgactatagagatccatttacgctacccatgttgccaaatgag
aagaagaaagctgcagctgcaaaagccgagttagcctcatggtatggtggaagaagtgat
caattagcagttgtggctgcatttgagggctggaaaagtgcgaaagaaactggtcaagaa
tcgaggttttgttctaagtacttcttatcttcaggcactatgcatatgctatcaggaatg
cgtaaacaacttgcatctgaactgttgaggaatgggtttattcccggagatggatcttcc
tgtaaccttaacgcacaggatccaggcatactacatgctgttcttgttgctggtttgtac
cctatggttggaagactgctcccgcctttgaaaaataacaagaagtctgtcattgagact
gcaggtggtgataaagttcgattaagccctcattctactaacttcaagctttcattccaa
aaattctatgaccaaccactaattgcatatgatgagataactcgtggtgatggaggtctg
cttataaggaattgtagtgtcattgggccactcccactgttattgctggcaacagagatt
gtcgtggctcctggaaatgaagatgatgatgatgacaatgatgatgatgaaagtgattac
gaagatgctgatgaggacaatggcgaggaaggtaatattaaagcagatctgtcagaagcc
catcaaggagagaaaattatgtcttcacctgataatacagttaaggtcattgttgataga
tggatcccttttgagtcaacagctcttgatgttgctcaaatttactgcttgagagagagg
ttagctgcagcaattttatttaaggtcacacatcctggaaaagttcttcctgaggttctt
gcagcctctataaatgcaatgggttgcatcttgtcgtacaatgggatgtcaggaatatca
ttgccgcatgagcctgtggactcacttactacaatggttggtgctactgagattggtcag
tctgatcctgggtggaataacagaatggatatgaatcctaacatccggcatcagcatccc
aatatgcatcaacaaagaggaggtggcattcatgtaccaaagggatcgtctgcgcataga
ggaaccatgcaaagaggtcattctaagcggaaacgtggaaatggaccttattga
DBGET
integrated database retrieval system
