Solanum pennellii: 107026427
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Entry
107026427 CDS
T04130
Name
(RefSeq) E3 ubiquitin ligase PQT3-like
KO
K15541
protein MPE1
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107026427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107026427
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107026427
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
107026427
NCBI-ProteinID:
XP_015082879
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All DBs
Position
1:complement(108242526..108243653)
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AA seq
375 aa
AA seq
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MSVYIKYKSCKDYDSIPILDHFISVGNLKSKIFESKRYGWGKDFDLLVTNLQTNEDYVDH
ATLIPRSTSVLIRRVAGLRCFPIVIKEEPKQVQCKQEEVHSVKKESKYPQDIDYDDFGDD
VYAIPKVAVAIQLGNPVPTSTSSIIKNSVGNISYNNTRSAGFSVGQGGMEWKNPPPGPGY
VCHRCKVPGHFIQHCRTNGDPNYDIKKLQPPSASVAVLRPYVAADTKVVQGSSSKHSYTA
IPPELHCSLCKGLMKDAVIASKCCFSSFCDKCIRNHIMSNSVCVCGATNILVDALLPNLT
LRATVNRFLQSNSTTSSESCRTIEEFPRAVEEVNMKKRKNSNDAANMQWGVETRNLGFKR
NKFEMSSEFSSVISY
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgtatatcaagtataaaagttgtaaggattatgattcgataccaattcttgat
cattttatttctgttggcaatctgaaatcaaagatatttgaatccaagcgttatggttgg
ggtaaagatttcgaccttcttgtcaccaacctacaaactaacgaagattatgttgatcat
gccaccttgattccaagaagtacaagtgttttgattcgtcgcgttgctggattacgttgc
ttccccattgtaatcaaagaggagcccaagcaagtgcagtgtaaacaggaggaggttcat
tcagttaaaaaagagtccaaatatcctcaagatattgattacgatgattttggcgatgat
gtgtatgcaattccaaaagtagcagtggcaattcaattaggcaatccagtgcccactagt
actagtagtataatcaagaattcagtaggaaacatatcgtataataacacaagatcagct
ggctttagtgttggacaaggtggaatggaatggaaaaacccaccaccaggaccagggtat
gtgtgtcatcgatgcaaggtgcctggccatttcattcagcattgccgtacaaatggtgac
cccaattacgacatcaagaaactgcagccacccagtgcaagtgttgctgttttgaggcct
tatgtggcagctgatactaaggtggttcaaggatcttcttcaaagcattcctatacagct
ataccaccagagcttcactgctcattgtgtaaaggattaatgaaagatgcagttatagca
agcaaatgttgttttagtagtttctgcgacaaatgcataaggaatcatattatgtctaac
tctgtttgcgtatgtggggctacaaatatacttgttgatgctctcttgcctaatttgact
ctaagagccacagtgaacagattcctacagtctaatagcactacttcttcagagtcttgt
aggacgatagaagagtttccacgagctgttgaagaagtaaacatgaagaaaaggaagaat
tcaaatgatgctgctaacatgcaatggggtgttgaaactagaaatttaggttttaaaagg
aataagtttgagatgagcagcgagttttcaagtgtaatttcttattga
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