Solanum pennellii: 107027259
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Entry
107027259 CDS
T04130
Name
(RefSeq) cell division cycle 20.2, cofactor of APC complex-like isoform X1
KO
K03363
cell division cycle 20, cofactor of APC complex
Organism
spen
Solanum pennellii
Pathway
spen04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107027259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107027259
03036 Chromosome and associated proteins [BR:
spen03036
]
107027259
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
APC/C
Target recognizing subunit
107027259
Chromosome and associated proteins [BR:
spen03036
]
Eukaryotic type
Sister chromatid separation proteins
APC/C complex
107027259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
ANAPC4_WD40
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
eIF2A
Ge1_WD40
NBCH_WD40
RMC1_N
Beta-prop_SPT8
Beta-prop_RIG_1st
WDR54
KNTC1_N
PD40
Beta-prop_IFT80_2nd
Motif
Other DBs
NCBI-GeneID:
107027259
NCBI-ProteinID:
XP_015083928
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All DBs
Position
8:389439..392412
Genome browser
AA seq
449 aa
AA seq
DB search
MDAGSRYNKFRPPLVNQMSHKKRTRENLDRFIPNRSAMDFDYAHYMLSGGKVKKEHYGVN
SPSKEAYSKQLAEIFNMNRTRILAFKNKPPHSAERVSESPSSIQQSKTVKKRRYIPQSSE
RTLDAPDILDDFYLNLLDWGSNNVIAIALGNSVYLWDASDGSVTELLTVDDDFGPVTAVS
WSPDGRSLAVGLNNSHVQLWNTLQGSSRLMRTLQGHRLRVGSLDWNGHILTTGGMDGMII
NNDVRIRSHIVGTYRGHNQEICGLKWSASGQQLASGGNDNLVHIWSISMGSANSTHQWVH
RMTDHTSAVKALSWCPFQSNMVASGGGIGDQCIKFWNTNTGACLNSVNTGSQVCSLLWNR
HDRELLSSHGFIDNQLAVWKYPSMTKISELLGHTSRVLHMAQSPDGYTVATAAADETLRL
WNVFGNPTTETKPVLKRKLEPFFDLAQIR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagggagcagatacaataagtttcgacctcctctcgttaatcagatgtctcac
aagaaaagaactcgagagaatctggacaggtttatacccaatcgttctgcgatggatttt
gactatgcacattacatgctcagtggtgggaaggttaaaaaggaacactatggagtaaat
tctccatctaaagaagcttactcgaagcagttagcagaaattttcaacatgaacagaacg
aggatccttgcttttaagaataagcctccacattcggctgagagagtttctgaatctcca
tcatctatacaacagtcaaaaaccgttaaaaagaggagatacattccccaatcttcggag
aggaccctggatgctcctgacatcctagatgacttttatctcaatttgttagactgggga
agcaataacgtaattgccattgccttgggaaattctgtatatctatgggatgcttctgat
gggtctgttactgagcttctcacggttgatgatgattttgggccggtgactgctgtcagc
tggtcaccagatggaagaagccttgcagtaggcttgaataattcacacgttcagctgtgg
aacaccttgcaggggtctagccgattgatgaggactttacaaggacacagattaagggtt
ggctcactcgattggaatggacacatactgacaactgggggcatggacggtatgatcatc
aacaatgacgtgcgtataagatctcacatagttggaacatatagaggacacaatcaggag
atatgtggattgaagtggtctgcttcaggccagcaattggctagtggagggaacgacaat
ttggttcatatatggagcatatcgatggggtctgctaactctacacaccaatgggttcac
cgtatgacagatcacacatctgctgttaaagctctttcctggtgtcctttccagagtaat
atggtcgcctcaggcggtggcattggagatcaatgcataaagttttggaacaccaataca
ggggcatgcttgaactctgtcaatacaggttcacaagtctgttccttgctttggaacaga
catgaccgcgagcttttgagttctcatggctttattgacaaccagcttgctgtttggaaa
tatccttctatgacgaaaatttctgaacttcttggtcacacatcaagagttcttcatatg
gctcagagcccggatggctataccgtggcgactgcagctgctgatgagacactaaggtta
tggaatgtttttgggaatcctactacagagacgaagcctgtgctaaagagaaagctagaa
ccattttttgacttggctcagattagataa
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