Solanum pennellii: 107027809
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Entry
107027809 CDS
T04130
Name
(RefSeq) RNA-binding KH domain-containing protein PEPPER-like
KO
K21444
poly(rC)-binding protein 3/4
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107027809
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
107027809
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
MOEP19
TrcR
Motif
Other DBs
NCBI-GeneID:
107027809
NCBI-ProteinID:
XP_015084361
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Position
8:62624386..62626865
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AA seq
408 aa
AA seq
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MVYSTVTSSLFAPAICASSSVPPPPPESLAVKSGSVATGESVQKWPGWPGDNVFKLVVPI
AKVGGIIGRRGEVVKRMCKETGASIRVLEGPVGNADQIVLISGRENPDAEVSPAMDAAIR
IFKCVAGLNNDDPGAVAAFVSSKLLVASAQAIHLIGKNGSTINSIQERSGAVLRVLPADN
VALCVTKDDRIIEIHGEGPKVLNAFDAVVKLLRKFLVHHSMIPIFEKMYQPSRPASAAVS
DYQDPYLLDHGTAVDSKTPRSTLPRYGQDIVTKITKVMQVPLGYAEEIIGAEGCNIAYIR
RTSGATLTVQGSRVPEEITIEIKGTSSEVKAAEQLIQEFIDNHQEPAPRMYGTGEPEFGS
FSRYGDPYSSSSSFPPQSFEGYGSSFPPQSFEGYGSSSLGGGYNSYRY
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggtgtactctactgttactagctcattatttgcaccggcaatttgtgcttcatcgtca
gttccgccgcctccgccggaatcgcttgctgtaaaatccggttctgttgctacaggggaa
tcggttcagaaatggccgggatggcctggggataacgtgttcaagctagttgtgccaatt
gctaaagttggtggtataattgggcggaggggagaagttgtaaagaggatgtgtaaagag
actggtgccagtattcgtgttctcgaaggtcctgttggcaatgctgatcaaattgtttta
atatctggtagagaaaatccagatgctgaggtatctccagcaatggatgctgctattaga
atttttaagtgcgttgcggggctaaacaatgatgatccaggagcagtagctgcatttgtg
tcttcaaagttattggtggcttcagcacaagccattcacttgatcggtaaaaatggttcc
acgatcaattcaatacaagaaagatcaggtgctgtgctaagagtattacctgcagataat
gtggccctttgtgtcactaaagatgataggattattgaaatacatggagaaggtccgaag
gttctcaatgcttttgatgcagttgttaaactactgaggaagttcctggtccatcatagc
atgataccgatttttgagaaaatgtatcagccttctcgtcctgcatctgcagctgtttct
gattaccaagacccttacttacttgatcatggaactgccgtggactctaaaaccccacgg
tctacactaccgcgatatggacaggatattgtaacaaagatcacaaaggttatgcaagtc
ccgctggggtatgctgaggaaatcattggtgctgaaggctgtaatatagcatatattcgc
cgcacaagtggggcaactcttactgtgcaagggagccgagtacctgaagaaatcactatt
gagattaagggtacctcatcagaggttaaagcagctgaacaacttattcaggagttcatt
gataaccaccaagagccagccccaagaatgtatgggacgggtgaacctgagtttggttct
ttttcgcgttatggtgacccctattcttcatcatcttcgtttccacctcagagttttgag
gggtatggatcgtcttttccacctcagagtttcgaggggtatggatcgtctagtttagga
ggaggatacaacagttatagatactaa
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