Solanum pennellii: 107027855
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Entry
107027855 CDS
T04130
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107027855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107027855
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107027855
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_11
bMERB_dom
Motif
Other DBs
NCBI-GeneID:
107027855
NCBI-ProteinID:
XP_015084392
UniProt:
A0ABM1HEG9
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Position
8:65980522..65983421
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AA seq
889 aa
AA seq
DB search
MDSGDGSVSKRRTRQQSLKHMVEIVEKRNELSQSGDSTIGRKRKKMGNSGVENNGRRKFS
RGTSEYLTKQSFVEEVSDDDDSSSEETGPDPDVDVDIVEEEEEGSDPDVVSVAEEEEEEL
EDDDDEIDPDATSYHKSEIESSTDALRKNPKKILEETEFLKFVVDSIKNVDDRKEVPPPE
EKEHVSFKETLPLVFRFEDEEPLPPEKEEWEKEIEELFSEMNMCILESNIGFTNPSVSPM
QSGELSECQMGNHKLKLDEQIGLFCSVCSYVHLEMKYIFPDFARRTQGRYERKCFGESPS
VLDVDGFRVPDSSAAEDSPVFGEGTVWDLVPQSSKATMYPHQRGGFEFMWNNIAGDTKIE
RLREPLSESKGGCIISHPPGTGKTRLTIVFLQSYLKLFPKCRPVVIAPSNLLLNWEAEFQ
KWAMDIPFHNLNNKNFSLKEDEGTVGVFHCLSGAAKKNPHLIRMVKLKSWAKSKSVLGIS
YDLFRILTGEDGEGYNKELREILLKFPSLLVLEEGHTARNEHSLVWKALKKVETEKRILL
SGTPFQNNIKELYNTLCVVSPKFAADLEQKWASLSSSIDKNARALEELRDILSPLVHKCS
ENVKKVGLPGIRDTVIHLKPTELQKELLKRVPENPGSFYEQNLMSLISVHPSLVANRKEF
SELESQLKERRCQLDPDIGVKMKFVIELIRLCGGWKERVIIFSQLLDPLNLIKEQLNSLF
SWTLGREILYMDGKLDVNQRQISINSLNDPKSDVKVLLASTKACSEGISLIGASRVVLLD
VLWNPSVEQQAISRAYRNGQTKFVHVYCPVTSKWEVDKIEQQTRKRYHSDVLLSRNEENT
SCSVSEDIILECMVKHDGLRHIFEKLSHAPRVVPSTCFNFGSQPSKGSS
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggacggctctgtttcaaagaggagaactagacaacaatctttaaaacat
atggtggagattgttgaaaagaggaacgagttgagtcaaagtggggattctacgattgga
aggaaaagaaaaaagatggggaattctggagtggaaaacaatgggaggaggaagttcagt
cgaggaacttctgagtacttgacaaagcagagtttcgttgaggaagtatctgatgatgat
gattcctcatcggaggagactggtcctgatcctgatgttgatgttgatattgttgaggag
gaggaggagggcagtgatcctgatgttgttagcgttgcggaggaggaagaggaggagttg
gaggatgatgatgatgagattgatcctgatgcaacctcataccataagtcggaaatcgaa
tcttcaactgatgctcttcgaaagaatccgaagaagattcttgaagagactgaatttctt
aaattcgttgttgattcaataaaaaatgtcgatgatcgcaaggaagtccctcctccagaa
gagaaggaacatgtttctttcaaagaaacacttcctttagtattccgatttgaagacgag
gaacctcttccccctgagaaagaagaatgggaaaaggaaatagaagagcttttctctgag
atgaacatgtgcatcttggaatcaaatattggatttacgaatccatcagtttcgccgatg
cagagtggagaattaagtgaatgtcaaatggggaaccacaagcttaagctagatgaacaa
ataggactcttctgttcagtttgttcatatgtccatttggagatgaaatacatcttccct
gattttgctcggagaactcaagggagatatgaaagaaaatgctttggagaatccccatca
gtcttggatgttgacggcttcagagttcctgattcttcagcagctgaggattctcccgtt
tttggagaaggaaccgtgtgggatttggttccccaaagttccaaagccactatgtatcct
catcaacgtggagggtttgagttcatgtggaacaacatcgctggagatacaaagattgaa
aggttgagagaacccctatcggagagtaagggagggtgcattatctcacacccacctggc
accggaaaaacacgactgaccatagtgtttcttcagtcgtatctgaagctgtttccaaag
tgtcggcctgtagtcatagctccgtcaaatttacttcttaactgggaagcggagttccaa
aaatgggcgatggatattcccttccacaatttgaacaacaagaacttttctttaaaggaa
gatgaaggtactgttggtgtctttcactgtttatccggtgctgcgaaaaaaaatccacat
cttatacggatggtgaagctgaaatcctgggcgaaaagtaagagtgttttgggaattagt
tacgatttgttcaggattctcacaggagaagatggagaaggttataacaaagagcttaga
gaaatactcctaaagtttcctagtctgctggtccttgaagaggggcacactgctcggaat
gagcacagccttgtgtggaaagcactgaagaaggttgaaacagagaagcgcatacttctt
tctggaactccgttccagaataacatcaaagaactgtacaacactctctgtgtagttagt
ccaaagtttgctgctgatttggagcagaaatgggcttctcttagcagttcaattgacaag
aatgcccgagcgttggaagagcttagggatattctttcaccccttgtccataaatgtagc
gaaaatgtaaagaaggtaggccttccaggtatacgggatacagtaatacatttgaaaccc
acagagttgcagaaggagttacttaaaagagttccagagaatccgggatccttttatgaa
caaaatctgatgtctctgatctctgttcatccttcattagtggcaaataggaaggagttc
tcggagttagaaagtcagctcaaggaaagaagatgtcagttggatcctgatattggggta
aaaatgaaatttgttattgaactgattagactatgtggtgggtggaaggagagggttatt
atatttagccagttacttgatcctctaaacctgatcaaggagcagctcaattctcttttt
agctggactttaggccgagagattctctatatggatgggaaacttgatgtaaaccagcgg
caaatatcaataaattctctgaatgatcctaagagtgatgtaaaagtgcttcttgcatcg
acaaaagcctgctcagaagggataagtttaataggggcctcaagagtggttttgcttgat
gttctctggaatccctcggtagaacagcaagccatcagtcgagcatacaggaatggtcag
acaaaatttgttcatgtttactgtccagtgacatcgaaatgggaggttgacaagatcgaa
caacaaacaagaaagagatatcattcagatgtactgctgtccaggaatgaagagaacact
tcatgttctgtgtcagaggatatcatactagaatgcatggttaagcatgacggcctgcgt
catatttttgaaaagctatctcatgcacctcgtgtggtgccttcgacatgctttaatttt
ggtagccaaccttcaaaagggagcagttag
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