Solanum pennellii: 107027904
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Entry
107027904 CDS
T04130
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107027904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107027904
03016 Transfer RNA biogenesis [BR:
spen03016
]
107027904
Enzymes [BR:
spen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
107027904
Messenger RNA biogenesis [BR:
spen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
107027904
Transfer RNA biogenesis [BR:
spen03016
]
Prokaryotic type
tRNA degradation factors
107027904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
107027904
NCBI-ProteinID:
XP_015084437
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All DBs
Position
8:58622307..58626166
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AA seq
906 aa
AA seq
DB search
MFANPSFHGRPLHFLPTVRNELCRSYAFPLQLHSTTYHFLASSTLENRRNRSPRRRRSLK
QFSIRASVDPQDLSLLAPDTAGVPGSPSPFSVRIPVGDRHITVETGLIGRQASGAVTIRD
GETIIYTTVCLADVPSEPADFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVLICRLI
DRPLRPTMPKGFYHETQLLSWVLSYDGVHPPDALSVTAAGIAMALSQVPNSHVIAGVRIG
LIGEKFILNPTIKEMENSKLDLLLAGTKEAILMIEGYCDFLPEDKLLEAVEVGQDAVRGI
CKEVEALVQKCGKPKMFDAIRLPPKELYKLVEEIAGSELVEVLQIKNKIPRRKALSSLED
NVISILSEKGYISTMEAFVSTETMPDLLEEEDEDEEVVVDGEVDEGDIHIKPVARKSAPL
LFSEVDVKLVFKEVMSKFLRKQIVDKGKRSDGRSPQEIRLIDARCGLLPRAHGSALFTRG
ETQSLAVVTLGDKQMAQKIDNLVDEDEYKRFYLQYSFPPSCVGEVGRVGAPSRREVGHGT
LAERALQPILPPEDDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCSIAGIA
MGMVLDTKEFGGDGTPLILSDILGSEDASGDMDFKVAGNDVGITAFQMDIKVGGITLPIM
KQALLQAKDGRKHILAEMSKCSPPPSRELSKYAPLIHVMKVKPEKINLIIGAGGKKVKSI
IEETGVEAIETQDDGVVKITAKDLSSLEKSKAIISNLTMVPTVGDIYKNCEIKSVAPYGV
FVEIVPGREGLCHISELSANWLAKAEDAFKVGDRLDVKLIEINDKGQLRLSRRALLPDAE
TEKQSTKPRSGSLSNDNAVSPKISDKGKSKKAVTVSKESENPLKEKTVPVNISSPVNEAD
KRSVSP
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccaaccctagcttccatggccgacctctacacttcctaccaactgttcgcaat
gaactctgcaggtcatacgctttccctctacagcttcacagcacaacctatcactttctt
gcttcctcaacattggaaaacaggaggaacagaagcccaagacgaagacgaagtcttaag
caattctccataagagcttcagttgaccctcaggacttgtctcttttagctccggatact
gcaggagttccaggttctccttcccctttctctgttcgaattcctgttggcgatagacat
attaccgttgaaacaggtcttataggaaggcaagctagtggggctgttacaattagagat
ggagaaactattatctatacaactgtttgtttagctgatgtaccaagtgagcctgctgac
tttttcccactttctgtacattatcaagaacgtttctctgcagctggtaggactagtggg
gggttttttaaaagggaagggaggacgaaagatcatgaggttcttatttgtagattgata
gacaggcctttacgtccaaccatgcctaaggggttttatcatgaaactcaactgctttct
tgggtattaagttatgatggtgtgcatccaccagatgcattgtcagttactgctgctgga
attgctatggctttgtcacaagtaccgaattcacacgttattgctggggttcgaattggt
cttattggtgaaaaattcatcctgaatccaaccattaaggaaatggagaactccaagttg
gatttgttactagcggggaccaaagaagcaatattgatgattgaggggtactgtgatttt
cttccggaggataagttgcttgaagctgtagaagttgggcaagatgctgtgcgaggtatc
tgcaaggaggtggaagctttagtgcagaaatgcggaaagcccaaaatgtttgatgcaatc
agattacctcctaaggagctgtataagctagtggaagaaattgctggcagtgagttagtg
gaagttctacaaatcaaaaacaagattccaagaagaaaggcgttatcatcactggaagat
aatgtaataagcatattgtctgaaaagggttatatcagtacgatggaagcttttgtgtca
actgagacgatgccagatttgctagaggaggaggacgaagatgaagaagtggtggttgat
ggtgaagttgatgagggtgatattcacataaagccagttgcaagaaaatctgcgccattg
ctgttctctgaggttgatgtgaagctggtatttaaggaagttatgtccaaatttttgcgg
aaacagattgtggacaagggtaagagaagtgatggaaggagccctcaggagatacgattg
attgatgcacgctgtggactgcttcctagggcacatgggagtgctctcttcactcgaggt
gaaacacagtcactggcggtggtaacacttggagataagcaaatggcacagaagatagac
aaccttgtggatgaagatgaatacaagagattttatcttcagtactcatttccaccctct
tgcgttggtgaagttgggagggtaggggccccatctagaagagaagttggtcatggaacg
cttgcagagagagcactacaaccaatactgccccctgaagatgacttcccttacactgtt
cgtgttgagagtaccatcactgaaagcaatggttcgtcgagtatggcgtctgtatgtggt
gggtgcttagctttgcaagatgccggtgttcctgttaagtgttctattgcaggtattgca
atgggtatggttctggacacaaaggaatttggtggagatggaactccactcatcctttca
gatatattgggttctgaagatgcatcaggagatatggatttcaaggttgctggaaatgat
gttggtattacagcatttcagatggacataaaggttggaggaattacactgccaatcatg
aaacaagctctcttacaagcaaaagatggtcgaaagcacattcttgctgagatgtcaaaa
tgctcaccacccccttcaagagagctgtcgaaatatgctccgctcatccatgttatgaag
gttaaaccagaaaagataaaccttataattggcgccggtggaaagaaggtgaagagcatt
attgaagaaactggtgttgaagctattgaaacacaagatgatggtgtggtgaaaataact
gcaaaggatttgtcaagcctggaaaagtcaaaagctatcataagtaatctaacaatggtt
ccaactgttggtgacatatataagaactgtgaaattaaatcggttgcgccttatggtgtt
tttgtggagatcgtgcctggacgagagggattatgccatatcagtgagctgagtgcaaat
tggctagccaaggctgaagatgctttcaaagttggagaccgcctggatgtcaagctcata
gagatcaatgacaaggggcagcttcgcttaagccgacgtgcattacttccagatgctgag
accgagaaacaaagtacaaaaccacgcagtggtagcctttcaaatgacaatgcagtttca
ccaaaaatttcagacaagggtaaatcaaagaaagctgtgactgtctcaaaggagagtgag
aatcctctgaaggagaaaacagttccggtcaacatatcaagcccagtgaatgaagcagac
aagagatcagtaagtccataa
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