Solanum pennellii: 107028425
Help
Entry
107028425 CDS
T04130
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107028425
Membrane trafficking [BR:
spen04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
107028425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
FimL_2nd
Motif
Other DBs
NCBI-GeneID:
107028425
NCBI-ProteinID:
XP_015084970
UniProt:
A0ABM1HFW2
LinkDB
All DBs
Position
8:complement(2144369..2153737)
Genome browser
AA seq
1467 aa
AA seq
DB search
MASNPPFLVEDQTDEDFFDKLVNDDDDDVGFNVTTSSTGLGAGASASSVYVDGNESDEVK
AFADLSISDDVDSGVDTGKKEGEKVDKGVDSIAKPDLVVEGNRENSSGSLVSLTSGMSDG
LLESSNGNLETEVIDGKTENQTSGSSNSGVKEVGWGAFHADPVTNDASGFGSYMDFFSEL
GDNNGDATGNVGENVNKASTVSPAEQVHDTKQVHETAHLENSSSLTQSQDSYVHDATAEQ
VADGQDLNSTQYWENLYPGWKYDTSTGQWYQVDSYESGANVQGSTDLVSDWSVSDGTSEV
SYLQKTAQSVSGNAAESGTTESVTNWNQVSQVNDATQNLANWNQAMQASDNRGTVIDWNQ
ATLASDAGVLTTDWNQASQLNNGYPSHMVFDPQYPGWYYDTIALEWRSLESYTSSVQSTV
QGESQLDQNGLASVQTSSHNSDQRNYGAYGHNDNSRLQEFSSGGGDYNWSGSFGNYNQNQ
YSSNISQNENVAKSNTVSEYRGNQQLENNYSHNFSASSHLNRQINNHYEGTVPYNANTTQ
SQNDQRFFSGGGSGQQFSQPTLQQYEQKHSSSDYYGTQTTANYSQQAFQSSQQFAHAPTA
GKSSAGRPPHALVSFGFGGKLIVMKDQSSFGNSSFGSQNPVGGSISVLSLMDVVSERVDS
SSVVMGTCDYTQALCQQSFPGPLVGGSPSIKELNKWIDERIANSEPRDLDYRKGEVLRLL
LSLLKIACQYYGKLRSPFGTDAVLKESDVPETAIAKLFASVKRNGVQANQYGSLAQCLQQ
LPSEGQMQATAAEVQSLLVSGRKKEALQCAQEGQLWGPALILAAQLGDQFYGETVKQMAL
RQLVAGSPLRTLCLLIAGQPADVFSLDSRVHSGMPVGNAVQQPAQFGANIMLDDWEENLA
VITANRTKDDELVLIHLGDCLWKERSDIVAAHICYLVAEANFEQYSDTARLCLVGADHLK
FPRTYASPEAIQRTEIYEYSKVLGNSQFILPPFQPYKLVYAHMLAEVGRISDALKYCQAL
SKSLKTGRTPETETLRQLVSSLEERIKTHQQGGFSTNLAPAKLVGKLLNLFDSTAHRVVG
GLPPPMPTSGSSQGNEHHHQFVSPRVSSSQSTMAMSSLIPSEPSSDSSRMTMHNRSVSEP
DIGRTPRQVDSSKDASSSNTGSNASGAGGMSRFRRFGFGSQLLQKTVGLVLKPRQGRQAK
LGDSNKFYYDEKLKRWVEEGAELPAAEPPLAPPPTAPAFPNGAPDYNVKSVLKSESPICN
NGFPEMKSPTSSDNGAGIPPLPPTSNQFSARGRMGVRSRYVDTFNKGGGNPTNLFQSPSV
PSIKPATAGNAKFFVPAPMSPVEETGNSTFHEQETSSNSESDSVSAANGPTHFPAPTSST
APIQRFASMDNLSNKGAVASSLSANSRRTASWSGSFPDALSPNRSEIKPLGSRLSMPPSS
FIPSDVHSMHSSTNGGSLSDDLQEVDL
NT seq
4404 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgaatcctccatttttagtggaggatcagacggatgaggatttttttgataag
ttggttaatgatgatgatgatgatgttggttttaatgtaactacatcgtcaacgggtttg
ggtgcgggtgcgagtgcgagctcggtgtatgttgatggaaatgaatctgatgaggttaaa
gcctttgctgatctcagtataagtgatgatgttgatagtggagttgatactgggaagaag
gaaggggagaaagtagataaaggtgttgatagcattgctaaaccggatttggtagttgag
gggaacagagagaacagtagtggttctttagtgtcattgacttctggaatgtcagatggt
ttactcgaatccagcaacggtaatttggagactgaggtaattgacggtaagacggagaat
cagaccagtggatcgagcaattcgggtgtgaaggaagttggatggggtgctttccatgct
gatccagttacaaatgatgcttctgggtttggatcctacatggactttttcagtgaattg
ggagataataacggtgatgcgacgggaaatgttggtgagaatgtgaataaggcgtcaact
gtttcgccagctgaacaggttcatgacacaaaacaagttcatgaaacagcgcatctggag
aattctagttccttaacacagagtcaagatagttatgtccatgatgctaccgcagaacaa
gttgcagatggacaggatctaaatagtacccagtattgggaaaacctttatccaggatgg
aagtatgacacaagtaccgggcagtggtatcaggttgatagttatgaatcaggagctaat
gtacaaggaagtactgatttggtttctgattggtcagtttctgatggaacgtcagaggtc
tcgtacctacagaaaactgctcagtctgtatctggcaatgcagctgagagtggtaccact
gagagtgtcactaattggaatcaggtttcgcaggtaaatgatgctactcagaatctggca
aactggaatcaggctatgcaggcaagtgacaatagggggactgtgattgactggaatcaa
gcgacgctggctagtgatgcaggtgttcttacaactgactggaatcaggcctcacaactt
aacaatgggtatccgtcacatatggtttttgatcctcagtaccctggttggtattatgat
acaattgcacttgaatggcgctcgctggagagctacacatcatctgtccaatcaactgtt
caaggtgagagccaactggatcagaatggtttggcttcagtgcagacgtcctctcacaat
agtgatcaaaggaattatggtgcatacgggcacaatgacaatagtagattacaagaattt
agcagcggtggaggagattacaactggtctggctcttttggtaattacaatcagaatcag
tatagctcaaatatatcgcaaaatgaaaatgttgcaaaaagtaacactgtgtcggaatat
agggggaaccaacaattagagaacaactacagccataatttttctgcaagtagccatctt
aataggcaaatcaataatcattatgagggaacagttccatacaatgcaaacacaactcaa
agtcaaaatgaccaacgttttttctctggtgggggttcgggtcagcaatttagtcagcca
acactccagcaatatgagcagaagcattcctcaagtgattactatgggactcagaccaca
gccaattattcacagcaagcatttcagagtagccagcagtttgctcatgctcccactgca
ggaaaatcatctgctggccgtccaccacatgctttggtctcttttggttttggtggaaaa
ctgattgtgatgaaagatcagagttcttttgggaactcatcctttggaagtcagaatcct
gtaggaggttcaatatctgtgctcagtttgatggatgttgtgtctgagagagttgatagt
tcaagtgttgtgatgggaacatgtgactatactcaagctttgtgccaacaatcattccct
ggtccgctagttggtggaagtcccagtatcaaggagttgaataaatggattgatgagaga
attgcaaactctgaacctcgtgacttggattacaggaaaggcgaagttttgaggttgctt
ctgtcattgctaaaaatagcatgtcaatattatgggaaactccgttctccttttggtacc
gatgctgtgttgaaggaaagtgatgttccagaaacagcaatagccaaattgtttgcatct
gtgaagaggaatggggtgcaagccaatcaatatggctctctcgcccagtgcttgcagcaa
ttgccctctgaaggacagatgcaggcgacagctgccgaggttcaaagtcttctagtatct
ggaagaaagaaagaagcattacaatgtgcacaagaggggcagttgtgggggccagctctt
attctcgctgcacagcttggtgatcagttctatggagaaacagtgaagcaaatggcactt
cgacagttggtagcagggtcacctttgcggacactgtgcctactaattgctggtcaaccg
gctgatgtcttttctctagattctagagttcacagtggcatgcctgttggaaatgcggtt
caacagcctgcacagtttggtgccaatatcatgctggatgactgggaagagaatttggct
gtgattactgcaaacagaacgaaggatgatgaactggtgcttattcatctcggtgattgt
ttgtggaaagagaggagtgatattgttgctgcacacatttgctatctagtggctgaagca
aactttgaacaatattcagataccgcaagattgtgtcttgtgggtgcagatcacttgaaa
ttcccacgaacttatgctagtccagaggctattcagaggacagagatttatgaatactca
aaggtgctggggaattctcaatttattctccctccttttcaaccatataaacttgtgtac
gcacacatgctagctgaagttgggaggatatcagacgcattaaagtactgtcaagcattg
tcgaaatcacttaaaactggccgaacccctgagacggaaacgctgagacagttagtgtca
tctcttgaggaaaggattaaaactcaccaacagggagggttctccacaaatttggctcct
gcaaaattggtcggtaaattgctgaacctttttgatagcacggctcatcgtgttgttggg
ggcttgccaccaccgatgccaacaagtggtagttcacaagggaatgaacatcatcatcag
tttgtgtcgcctagagtctcaagtagtcaatcaactatggcaatgtcatcactgatcccc
tcagaaccaagtagtgatagcagtagaatgacgatgcacaatagaagtgtttcagagcct
gacattgggagaactccaagacaggttgactcatcaaaggacgcaagctcaagtaacaca
ggaagcaatgcatcaggagctggaggaatgtcacgctttcgtcgctttggctttggctcc
cagcttctccagaaaactgttggattagtgctcaaaccccgtcaaggccgtcaggcaaaa
ttgggtgattcgaataaattttattatgatgaaaaacttaaaagatgggtagaggaaggc
gctgaacttcctgctgcagaaccaccccttgcacctccaccaaccgctcctgctttcccg
aatggagcgccagattataatgtgaagagtgtattgaaaagtgaaagtcctatatgcaac
aatggatttcctgaaatgaagagtccaacttcttctgataatggtgctggaattccacct
cttccacctacttccaaccaattctctgctcgtggtcgtatgggtgttcgttcaaggtat
gttgacacattcaacaaaggtggtggtaacccaaccaatctattccagtcaccatctgtt
ccttccataaagccagctactgctggcaatgccaagttttttgttcccgccccgatgtcc
cctgttgaagagacggggaacagtactttccacgagcaagaaacttcaagcaatagtgag
agtgattcagtttctgctgctaatggaccgacccattttcctgcaccaacatcaagtact
gcgcctatccaaagatttgcaagcatggacaacctctccaataaaggagctgttgctagc
tctctatcagctaactcccggcgaactgcatcatggagtggcagctttcctgatgcttta
tccccaaatagatctgaaataaaaccactgggctctagattgagtatgcctccgtcgtca
ttcattcctagtgatgttcattcgatgcattcctcaacgaatggcggcagtctcagtgat
gaccttcaagaagtagacctgtga
DBGET
integrated database retrieval system
