Solanum pennellii: 107028472
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Entry
107028472 CDS
T04130
Name
(RefSeq) protein transport protein SEC16B homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
spen04131
]
107028472
Membrane trafficking [BR:
spen04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
107028472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
107028472
NCBI-ProteinID:
XP_015085034
LinkDB
All DBs
Position
8:2133065..2141420
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AA seq
1466 aa
AA seq
DB search
MASYPPFLVEDQTDEDFFDKLVNDDDDDDVGFKVATSSTGLVAGASASSVYDDGNESDEV
KAFADLSISDDVDSGVETGKKEGEKVDKSDDSNAKPGLVVEGNGEKSSGSLVSLTSVRSD
GLLESSNGNLETEVTDGKTENHASGSSNSGVKEVGWSAFHADPVTNDASGFGSYVDFFSE
LGDKNGDTTGDVGENVNKGSISPAEQVHDKKQVHETQYLENTSSLTQGQDSYAHDATTEQ
VTDGHDLNSSQYWENLYPGWKYDTSTGQWYQVDNYESGANVQGSTDSSLVSDGTSEVLYQ
QKAAQSVSGNAAESGTTGSVTNWNQGLQVNSSTENVTNWIQASDNTSAVTDWNQVSLASD
AGGVTTDWNQASQLNNGYPSHMVFDPQYPDWYYDTVALEWRSLESYTSSAQSTVQGESQL
DQNGLASVQTSSYNNDQRDYGAYGHNDNSRFQGFSSSGGDYNWSGTLGNYNQYSSNMSQN
ENAAKSNHMSEYSGNQQLEKHYNQDFSASSHFNSQISNHYEGTVPYNAKAILNQNDQRFL
PGGGFSHQFSQPTLQQHEQKHASNDYYGTQTTANYSQQAFQSSQQFGQAPTVGRSSAGRP
PHALVSFGFGGKLIVMKDYSSSGNSSFGSQNPVGGSISLLSLMDVVSERVDSSSLAMGTC
DYTRALCRQSFLGPLVGGSPSIKELNKWMDERISNSESPDMDYRKGEVLRLLLSLLKIAC
QYYGKLRSPFGSEAVLKESDVPETAVAKLFASVKRNGMQFNQYGTVAQCLQQLPSEGQMR
TTASEVQSLLVSGRKKEALQCAQEGQLWGPALVLAAQLGDQFYVETVKQMALQQLAAGSP
LRTLCLLIAGQPADVFSVESTSQSGMPGVNAVQQPAQFGANIMLDDWEENLAVITANRTK
DDELVLIHLGDCLWKERSDIVAAHICYLVAEANFEQYSDTARLCLVGADHLKFPRTYASP
EAIQRTEIYEYSKVLGNSQFILPPFQPYKLVYAHMLAEVGRISDALKYCQALSKSLKTGR
TPETETLRQLVSSLEERIKTHQQGGFSTNLAPAKLVGKLLNLFDSTAHRVVGGLPPPMPT
NGSSQGSEHHHQFAGPRVSSSQSTMAMSSLIPSSSVERISEWAADSGRMTMHNRSVSEPD
IGRTPRQVDSSKEASSSNTGSDASGAGGTSRFRRFSFGSQLLHKTVGLVLKPRQGRQAKL
GDSNKFYYDENLKRWVEEGAALPDAEPPLAPPPTAAAFQNGAPDYNVKSVLKSESSICNN
GFPEMKSPTSAADGAGIPPLPPTSNQFSARGRMGVRSRYVDTFNKGGGNPTNLFQSPSVP
SIKPATAGNAKFFVPAPMSPVEETGNSTSNEQETSSNSESDSVSAVNGPIHFPAPTSSAA
PMQRFASMDNLSNKGAVASSLSANSRRTASWSGSFPDAFSPNRSEIKPPGSRLSMPPSSF
MPSDANSMHSSTNGGSFSDDLQEVDL
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtatcctccatttctagtggaggatcagacggatgaggatttttttgataaa
ttggttaatgatgatgatgatgatgatgttggttttaaggtagctacatcgtcaacgggt
ttggttgcgggtgcgagtgcgagctcggtgtatgatgatggaaatgaatctgatgaggtt
aaagcctttgctgatctcagtataagtgatgatgtcgatagtggagttgaaactgggaag
aaggaaggggagaaagtagataaaagtgatgatagcaatgctaaaccgggtttggtagtt
gaggggaatggagagaagagtagtggttctttagtgtcattgacttctgtgaggtcagat
ggattacttgagtccagcaatggtaatttggagactgaggtaactgatggtaagacggag
aatcacgccagtggatcgagcaattcgggtgtgaaggaagttggatggagtgctttccat
gctgatccagttacaaatgatgcttctgggttcggatcctatgtggactttttcagtgaa
ttgggtgataaaaacggtgatacaacgggagatgttggtgagaatgtgaataaagggtca
atttcgccagcggaacaggttcatgacaaaaaacaagttcatgaaacacagtatttggag
aatactagttcgttaacacagggtcaggatagttacgcccatgatgctaccacagaacaa
gttacagatggacacgatctaaatagtagtcagtattgggaaaatctttatccaggatgg
aagtatgacacaagtactgggcagtggtatcaggttgataattatgaatcaggagctaat
gtacaaggaagtactgattctagtttggtttctgatggaacgtcagaggttttgtaccaa
cagaaagctgctcagtctgtttctggtaatgcagctgagagtggtacaactgggagtgtc
actaattggaatcagggtttgcaggtaaacagttctactgagaatgtgacaaactggatc
caggctagtgacaatacaagcgctgtgactgactggaatcaggtgtcactggctagtgat
gcaggtggtgtcacgactgactggaatcaagcctcacaacttaacaatgggtatccgtca
catatggtttttgatcctcagtaccctgattggtattatgatacagttgcacttgaatgg
cgctctctggagagctacacatcgtctgctcaatcaactgttcaaggtgagagccagctg
gatcagaatggtttggcttcagtgcagacttcctcttacaataatgatcaaagggattac
ggtgcatacgggcacaatgacaatagtagatttcaagggtttagcagcagcggaggagat
tacaactggtctggcactctaggtaattacaatcagtatagctcaaatatgtcacaaaat
gaaaatgctgcaaagagtaaccatatgtcagaatatagtgggaaccagcaattagagaag
cactacaaccaagatttttcggcaagcagtcattttaatagtcaaatatctaatcattat
gagggaacagttccatacaatgcaaaagcaattctaaatcaaaatgaccaacgttttctc
cctggtgggggtttcagtcatcaatttagtcagccaacactccagcaacatgagcagaag
catgcctcaaatgattattatgggactcaaactacagccaattattcccagcaagcattt
cagagtagccagcagtttggtcaagctcccactgtaggaagatcatctgctggccgccca
ccacatgctttggtttcttttggttttggtggaaaattgattgtgatgaaagattatagt
tcttctggaaactcatcctttggaagtcagaatcctgtaggaggttcaatatctttgctc
agtttgatggatgttgtctctgagagagttgacagttcaagtcttgcgatggggacatgc
gactatacccgagctctgtgccgacaatcattccttggtccactagttggtggtagtccc
agtatcaaggagttgaataaatggatggatgagaggatttcaaactctgaatctcctgac
atggattacaggaaaggcgaagttttgaggttgcttctgtcattgctaaaaatagcatgt
caatattatggcaaactccgttctccgtttggtagtgaggctgtgttgaaggaaagtgat
gttccagaaacagcggtagccaaattgtttgcttctgtgaagaggaacgggatgcaattc
aatcaatatggcactgttgcccagtgcttgcagcaattgccttctgaaggacagatgcgg
actacggcttctgaggttcaaagtcttctagtatctggaagaaagaaagaagcattacaa
tgtgcacaagaggggcagttgtggggaccagctcttgttcttgctgcacaacttggtgat
cagttctatgtagaaacggtgaagcaaatggcacttcaacagttagctgcagggtcacct
ttgcggacactgtgcctattaattgctggtcaaccggctgatgtcttttctgtagaatct
acttctcaaagtggcatgcctggtgtaaatgcggttcaacagcctgcacagtttggtgct
aatatcatgctggatgactgggaagagaatttggctgttattactgcaaacagaacgaag
gatgacgaactggtgcttattcatcttggcgattgtttgtggaaagagaggagtgatatt
gttgctgcacacatttgctatctggtggctgaagcaaactttgagcaatattcagatact
gcaagattgtgtcttgtgggcgcagatcacttgaaattcccacgaacttatgctagtcca
gaggctattcagaggacagagatttatgaatactcaaaggtgctggggaattctcaattt
attctccctccttttcaaccatataaacttgtgtatgcacacatgctagctgaagttggg
aggatatcagacgcattaaagtactgtcaagcattgtcgaaatcacttaaaactggccga
acccctgagactgaaacactgagacagttagtgtcgtctcttgaggaaaggattaaaact
caccaacagggagggttctctacaaatttggctcctgcgaaattggttggtaaattactg
aatctttttgatagcacggctcatcgtgttgttgggggcttaccaccgccaatgccaaca
aatggcagttcccaagggagtgaacatcatcatcagtttgcggggcctagagtctcaagt
agtcaatcaaccatggcaatgtcatcactgatcccctcgtcgtctgtggagcgaataagt
gaatgggcagctgatagcggtagaatgacaatgcacaatagaagtgtttcagagcctgac
attggaagaactccaagacaggttgactcatcaaaggaagcaagctcaagtaacacagga
agcgatgcatcaggagctggcgggacatcacggtttcgtcgctttagctttggttcccag
cttctccataaaactgttggattagtgctcaaaccccgtcaaggccgtcaggcaaaattg
ggtgattcaaataaattttattatgatgaaaaccttaaaagatgggtagaggaaggagca
gcacttcctgatgcggaaccaccccttgcacccccaccaaccgctgctgctttccagaat
ggagcgccagattataatgtgaagagtgtattaaaaagtgaaagttctatatgcaacaat
gggtttccggaaatgaagagtccaacttctgctgctgatggtgctggaattccacctctt
ccacctacttccaaccaattctctgctcgtggtcgtatgggtgtccggtcaaggtacgtt
gacacattcaacaaaggtggtggtaacccaaccaatctattccagtcgccttctgtacct
tccataaagcctgctactgctggcaatgccaagttttttgtccctgcaccgatgtcccct
gttgaagagacgggaaacagtacttccaatgagcaagaaacttcaagtaatagtgagagt
gattcagtttctgctgttaatggaccgatccatttccctgcaccaacatcaagcgctgcg
cctatgcaaaggtttgcaagcatggacaacctctccaataaaggagctgttgctagctct
ctatcagctaactctcggcgaactgcatcatggagtggcagctttcctgatgctttttcc
cctaatagatctgaaataaaaccaccaggctctagattgagtatgcctccgtcttcattc
atgcccagtgatgctaattcgatgcattcctcaacgaatggtggcagtttcagtgatgac
cttcaagaagtagacctgtga
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