Solanum pennellii: 107028542 Help Entry 107028542         CDS       T04130                                  Name (RefSeq) RNA helicase aquarius   KO K12874   intron-binding protein aquarius Organism spen  Solanum pennellii Pathway spen03040   Spliceosome Brite KEGG Orthology (KO) [BR:spen00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     107028542  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:spen03041]     107028542 Spliceosome [BR:spen03041]  Complex B   Other components    Prp19-related factors     107028542  Complex C     107028542 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Aquarius_N_1st Aquarius_N_2nd AAA_11 AAA_12 Aquarius_N_3rd AAA_19 AAA_30 SLFN-g3_helicase UvrD-helicase ResIII UvrD_C_2 AAA_22 AAA AAA_16 GPHH Motif Other DBs NCBI-GeneID:  107028542 NCBI-ProteinID:  XP_015085133 UniProt:  A0ABM1HGA8 LinkDB All DBs Position 1:87675808..87689846 Genome browser AA seq 1588 aa AA seqDB search MTKVYGTGTYDFRRHRVAEYPVEALPQTAEAPQKMLPSMTEKPPESKPGSNIPSSITLAE IQRDRLTKIAASNWAKTGEKKAFSSELVKEIYDTELTVKGGRKPVPLQRVMILEVSQYLE NYLWPNFDPEASSFEHVMSMILMVNEKFRENVAAWICFYDRKDMFKAFLDRVLRLKEGRS LTIPEKINYLLFMINAFQSLEDEIVSKKVLRLAGLQCWHCLSYGRFQMELCVNPDLIKKW KKIAKRAKEAAKRGESFDTSTMLEVNFLRHLIEEFLEVLDCKVFPEPDDEVDSDLNFTSD FEGVNDASVLYCERFMEFLIDLLSQLPTRRYIRPVVADVAVVAKCHLSALYRHEKGKLFA QLVDLLQFYEGFEIDDHLGRQMTDDEVIQAHYDRFQSFQLLAFKKIPKLRELALANVGAI HRRADLSKKLSGLTPEELRDLVCRKLKLISVDDPCSNRVDFLIEVMVSFFERQQSQKEAI NALPLYPNEQIMWDESLVPSINYTGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEI REDIQEAVPHLLAYINNEGEPAFRGWSRMAVPVKEFKITEVKQPNIGEVKPAAVTAEVTF SISSYKSQIRSEWNALKEHDVLFLLSIRPSFEPLSAEEAANATVPQRLGLQCVRGCEIIE MRDEEGILMNDFTGRIKRDEWKPPKGDLRTVTVAIDTAQYHMDVGDIAEKGAEDIYGTFN ILMRRKPKENNFKAILESIRDLMNETCIVPDWLHDIFLGYGNPSAAQWTNMPDLLETVDF KDTFLDADHVRESFPDYQVCFVDQDGLENLQPSPPFKIKLPRNLKGKAHAIPGSENSTTA SVDSAGMPEVHSERDKLIVEAYIPPDPGPYPQDQPKRNSVRFTATQVGAIISGVQPGLSM VVGPPGTGKTDTAVQVLNVLYHNCPSQRTLIITHSNQALNDLFEKIMQRDVPARYLLRLG QGEQELATDLDFSRQGRVNAMLVRRLELLSEVERLARSLQLPEDVGYTCETAGYFWLLHV YSRWEQFLAACAAEQDNPTIVQDKFPFKEFFSDTPQPVFTGQSFGKDMRSAKGCFRHLKT MFQELEECRAFELLKSTVDRSNYLMTKQAKIVAMTCTHAALKRKDFLQVGFKYDNLLMEE SAQILEIETFIPMLLQRQEDGYARLKRCILIGDHHQLPPVVKNMAFQKYSHMDQSLFTRF VRLGIPYIELNAQGRARPSLARLYNWRYRELGDLPYVKESAVFHKANAGFSYDYQLVDVP DYNGRGESAPSPWFYQNEGEAEYIVSVYMYMRLLGYPANKISILTTYNGQKLLIRDVINR RCVPYDFIGPPHKVATVDKFQGQQNDFILLSLVRTRFVGHLRDVRRLIVAMSRARLGLYV FCRRSLFEQCYELQPTFRLLLERPDCLALNVEEATSLTNRPVGETGPVSVVSGPEEMQAI VNFKMHQVYQARMMSHIEYPAHPESVPEPSVEQNVMSLSHSMDSDKTAMEDGTKDTGPSE SMESTKVPPDGGEMLVVGHSNGEVDGEDQRVDSGELGTSTGSIEAPHDDAEILVASQSNG EADGKDQRVDRDGTDLENSSNVESKMEE NT seq 4767 nt NT seq  +upstreamnt  +downstreamnt atgaccaaggtatacggaactggcacctacgatttccggcgccaccgggtagctgagtac ccggtggaagcattgccgcagacggcggaggctccacagaaaatgctgccttctatgact gagaagccgccggagtcgaagcccgggtcgaacatacctagctccataacccttgctgag atccaacgtgaccgcttgactaaaattgcagcttccaattgggcgaaaactggagagaag aaagcctttagttctgagcttgttaaagaaatttatgacacggagcttactgtaaaaggg gggagaaagccggtgccattgcagagggtgatgatattggaggttagtcagtatttggag aattatctttggcccaattttgatccagaggcttcttccttcgagcatgtgatgtcaatg atactgatggtcaatgagaagtttcgggagaatgtggctgcatggatctgcttctatgat agaaaggatatgttcaaggcatttcttgatagggttcttcggctgaaagagggtagaagc ttgacaattcctgagaaaattaattatctacttttcatgatcaatgctttccagagttta gaagacgagatagtgagtaaaaaggttttgaggttagccggtctgcagtgttggcattgc ttgtcatatggtcgatttcagatggagctctgtgttaaccctgatcttatcaagaaatgg aagaaaattgcaaaaagagccaaggaggcagctaagagaggcgaatcttttgatacctca accatgctagaagtgaatttcctgagacatttaattgaggagtttcttgaggttcttgat tgcaaagtttttcctgagccagacgatgaggtcgatagtgacttaaatttcacaagtgat tttgaaggtgtaaacgatgcctctgtcctatattgtgaacggtttatggagtttctcatt gatctattgagccaactgccaactagaagatatataaggcctgttgttgctgatgttgct gtggttgcaaaatgtcatttaagtgctctttataggcacgaaaaaggaaagctttttgcc cagctggttgacttacttcagttctatgaagggtttgaaattgatgaccatttagggaga caaatgactgatgatgaggtgattcaggctcattatgatcgtttccagtcattccagctt cttgcatttaagaagataccgaagctacgggaacttgcattggcaaatgttggggcaata cacaggcgcgctgatctatctaagaaactttctgggcttactcctgaggagctgagagat ttagtatgccggaagctaaaactgatatcagttgatgatccatgctcaaatagagttgat ttcttaattgaagtaatggtatctttctttgagagacaacagtcacagaaagaggccata aatgctcttcctctttaccctaacgagcaaataatgtgggatgaaagccttgtaccgagc atcaactacactggggaaggatgcctggcacttccaaagctcaacctacagtttttgaca cttcacgactatcttcttagaaactttaacctctttcgccttgaatcgacttatgaaatc cgtgaggacatccaagaggctgtgccacatctccttgcttatatcaataatgaaggagag ccagcctttcgaggttggtcgagaatggctgtgccagttaaagaatttaagattacagaa gttaaacaaccaaatataggcgaagtaaagccagctgctgtaacagcagaagttactttc agtatctccagctacaaatcacaaataaggtcagaatggaatgcacttaaagagcacgat gttctctttttactgtctattcgtccttcattcgagcctctcagtgctgaagaagctgct aatgcaaccgtaccacagaggcttggtctccagtgtgttcgcggctgtgaaataattgag atgcgtgatgaggagggaatcctgatgaacgattttactgggagaatcaagcgggacgag tggaaaccccccaaaggagaccttagaactgttactgttgcaattgacacagcacaatac catatggatgttggtgatatagcagagaaaggcgcagaagatatttatggtacatttaat atattgatgaggaggaaaccgaaggagaataatttcaaagccatcttagaatctataagg gatctgatgaatgaaacatgcatagttcctgattggttgcatgatatatttttgggctat ggaaatccttctgcagcacagtggactaatatgccagacctccttgagacagtagatttt aaagataccttcctagatgctgatcatgttagggagagttttcctgattatcaggtttgc ttcgtcgaccaagatggcttagaaaacttgcaaccaagccccccttttaagataaagctt cctagaaatctcaaagggaaagctcatgccatccctggaagtgagaattctactactgct tcagttgattctgcaggcatgccagaagttcattccgaaagagacaagcttattgtcgaa gcatatatccctcctgatccaggtccatatcctcaggatcaaccaaagcggaattcggtt agatttaccgcgacacaggttggagcaatcatctcaggagttcagccgggtttatccatg gttgtgggaccccctggtacgggaaagactgataccgctgtgcaggttttgaatgttctc tatcataattgcccttctcaacggaccctgataatcactcattcgaatcaagctttaaat gatctttttgagaagataatgcaaagagatgtgccagctcgctaccttctccggcttggt cagggagagcaagaactagcaactgatcttgacttcagtcgtcaggggagagtaaatgcc atgcttgttcggcggctggaactgcttagtgaagtcgaacgccttgcaaggtcccttcaa cttcctgaagatgttggttatacatgtgaaactgcgggatacttctggctgcttcatgta tactcgcggtgggaacaatttttagctgcttgcgctgcagaacaagataacccaaccatt gttcaggataagtttccctttaaggaatttttttctgatactccccagccagttttcacg ggtcagtcttttggaaaggatatgcgttcagctaaggggtgctttcgtcatttgaaaaca atgtttcaagaactcgaagaatgtagggcatttgaattgctcaagtccactgttgatcga tctaattacctgatgaccaaacaggcaaaaattgtggcaatgacctgcactcacgcggca cttaaaaggaaggattttcttcaagtgggttttaagtatgacaacttgttgatggaagaa agtgcccaaattttggaaattgaaactttcatcccgatgttgcttcagaggcaggaagat ggctatgctcggcttaaacgctgtattctgattggcgaccatcatcaattgccccctgtc gtgaaaaatatggcttttcagaagtacagccacatggatcagagtctcttcacaagattt gtcagactagggataccatatattgagctcaatgcccagggtagggcccggccaagttta gctcgcctttacaattggagatacagagaactgggggatcttccttatgtgaaggagagt gcggtctttcataaagcaaatgctggattctcatatgactatcagttggtggatgtgcct gattacaatggcagaggtgaaagtgccccttcaccgtggttctatcaaaatgagggagag gctgaatacatagtcagtgtctatatgtatatgcgcttacttggatatcccgcgaataag atatcgatcttgactacttataatggtcagaaacttttgatccgcgatgttataaacaga agatgtgtcccttatgacttcattggtcctccacacaaggttgcaactgtcgataaattt caaggtcagcagaatgattttatcttattgtctctagtccgtacgcgctttgttggccac ctccgtgatgtcagaagattgattgttgcgatgtcccgtgctcgtctgggtctctatgtt ttttgtcgacgttctctttttgagcaatgttatgagcttcaaccaacgtttcgacttctt ttagagagacctgattgtctcgccctaaatgttgaggaggccacatctttgacaaatcgt cctgttggagaaactggaccagtcagtgttgttagtggacctgaggaaatgcaggctatt gtgaattttaagatgcaccaggtctatcaggcacggatgatgagccatattgagtatcca gctcatccagaatctgtccccgagccaagtgttgagcagaatgtgatgtccctatcccat agtatggattctgataagaccgctatggaagatggcacaaaagatactgggccttcagaa tcaatggagtccacgaaggttccacctgatggtggagagatgctagttgtgggccattca aatggagaggttgatggtgaggaccaaagagttgatagtggtgaactgggcacatcaact gggtccatagaggctccacatgatgatgcagagattttagttgcgagccagtcaaatgga gaggctgatgggaaggaccaaagagttgatagagatggaactgacctcgagaactcctcg aatgtggaaagcaagatggaagagtaa

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