Solanum pennellii: 107028586
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Entry
107028586 CDS
T04130
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
spen
Solanum pennellii
Pathway
spen03013
Nucleocytoplasmic transport
spen03015
mRNA surveillance pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107028586
09122 Translation
03013 Nucleocytoplasmic transport
107028586
03015 mRNA surveillance pathway
107028586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107028586
03041 Spliceosome [BR:
spen03041
]
107028586
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107028586
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107028586
Spliceosome [BR:
spen03041
]
Complex C
Other components
EJC/TREX
107028586
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107028586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
107028586
NCBI-ProteinID:
XP_015085193
UniProt:
A0ABM1HGF8
LinkDB
All DBs
Position
8:complement(49987428..49993549)
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AA seq
427 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKIPDSTTKVNGESAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILAL
ARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLMECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaacaaggagaacgatgcttatgaggaggagcttctcgactatgaagaagat
gacgaaaaaattcctgattctaccacaaaagtcaacggcgagtcggccaaaaagggttac
gttgggattcacagttcaggtttcagagactttcttctaaagccagagttgctgcgtgct
attgttgattctgggtttgagcatccgtccgaagtgcaacatgagtgcattccgcaagct
attctgggtatggatgtcatttgccaagctaaatctggaatgggaaaaaccgctgttttt
gtcctttcaactctgcagcagattgaaccggttgctggccaggttgctgcccttgttcta
tgtcacactagggaattagcttatcagatatgtcatgagtttgagaggttcagcacttat
ctgcctgatatcaaggttgctgttttctatggtggtgtcaacatcaagctccacaaagag
ctgctgaagaatgaatgccctcatattgttgttggaactcctggaagaatacttgcattg
gcaagagacaaggacctgtctttgaggaatgtgaggcattttatactagatgaatgtgac
aagatgcttgaatcacttgacatgaggagagacgtgcaggaaatcttcaagatgactcct
catgacaagcaagtcatgatgttttctgcaactctcagcaaggagattcgcccggtttgc
aagaaattcatgcaagatccaatggaaatttatgttgatgatgaggccaagttgaccctg
catggacttgttcagcactacatcaaattgagtgagacggagaaaaaccggaagctgaat
gacctattggatgcgttggacttcaaccaagtcgtaatttttgtcaagagtgtgagcaga
gcagcagagttgaacaagttacttatggagtgtaatttcccatctatctgcatccactct
ggcatgagtcaagaagaaagactgacacgctacaagggtttcaaggaagggcacaagaga
attcttgtggcaactgatttggttggtagaggcatagacattgaaagggtgaacattgtt
attaactatgatatgccagattctgcagatacttatcttcacagagtgggaagagctggt
agatttggaactaaagggcttgccataacttttgtgtcatctgcatcagattctgaagtt
cttaatcaggttcaggagaggtttgaagtggatattaaagaacttcctgagcagattgat
acttctacatacatgccatcttaa
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