Solanum pennellii: 107028734
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Entry
107028734 CDS
T04130
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
spen
Solanum pennellii
Pathway
spen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107028734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107028734
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107028734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_DCAF4
eIF2A
Beta-prop_IFT122_1st
WD40_RFWD3
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_SCAP
Beta-prop_Vps41
WD40_like
WD_LRWD1
WDR54
B-prop_COPA_B_2nd
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_NUP159_NUP214
TFIIA
Motif
Other DBs
NCBI-GeneID:
107028734
NCBI-ProteinID:
XP_015085398
LinkDB
All DBs
Position
8:60054448..60072015
Genome browser
AA seq
774 aa
AA seq
DB search
MMGDPHQHQQHPPLPQQQFQQQHQQQPQQQHQQQPQQQHQQQPQQLHQQQHPPHFGEYPR
GPQPLPGPPPMMRQPSASSTTLNAQLPGPPPHPSYDAHADSFAAKRMRKIGQRRAVDYTS
TVVRYMQIRMWQRDSRDRTVLQPSPAAAVDILPAVAYLDNPSTSFAAKFVHTSLNKNRCS
INCLAWTPSGRRLVTGSQSGEFTLWNGQSFNFEMILQAHDQAVRSMVWSHNDNWMVTGDD
GGTIKYWQNNMNNVKAHKNAHKESIRELSFCSTDLKFCSCSDDTTIKIWDFARCQEERSL
SGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELSSFHGHKNTVLCVKWNQNGNW
VLTASKDQIIKLYDIRAMKEVESFRGHQKDVTSLAWHPFHEEYFVSGSFDGSIFHWLVGH
EAPQVEITNAHETGVWDLAWHPIGYLLCSGSNDQTTKFWCRNRPGDSARDKFNLGQQGLG
DQHNVLGRMPGNFPGPEPPSTPGAFASGMLRTEGTIPGVGAAMPLSIPSLDSPSQGEQKT
SMPLGAPPLPPGPHPSLLASNQQQAYQQNMQQAQQQSLPQQMTSLPLQPPNLPQLQPPHM
PLMPHPHLPRPPHQLQPVNMPGIQSSMPGSGPIQGMPPMGIQGNMNQMGPPMPQGHFVGM
PPGSGPQGNVPPGGMPNGLNMQGPQNAGGNQMFPPVRGFNRPQAGQMPLMPGLNPYQVND
INLEIQTHHLECTCSQTLVINLECLRHCRQGLHHIIKDINRPLFIVSSFAQVVC
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtgatcctcatcagcatcagcagcacccaccgctgccacagcaacaattccag
caacaacaccagcaacaaccccagcaacaacaccagcaacagccccagcaacaacaccag
caacagccccagcaactgcaccagcaacaacatcctccacattttggagagtatccaagg
ggtccacaacctctgccaggtccacctcccatgatgcggcagccatctgcatcctccact
actcttaacgctcagctacctggacctcctcctcatccttcttatgacgctcatgctgac
agttttgctgcaaagagaatgagaaaaattggccagagaagagcagttgactacaccagt
acagttgtaagatatatgcagatccgcatgtggcagcgcgattcaagggataggacagtg
ttacaaccgagcccagcagcagcagttgatatattgccagcagttgcctatttggataat
ccatctacaagttttgctgctaaatttgttcatacatctctaaataaaaaccgttgttca
atcaattgtcttgcgtggactcctagtgggcggcgccttgttactggatctcaaagtggt
gaattcacactatggaatgggcaatcatttaactttgaaatgattcttcaggctcatgat
caagcagtcaggtcaatggtatggagccacaatgataactggatggtcactggtgatgac
gggggcacaataaagtattggcaaaacaatatgaataatgtcaaagcccataagaatgca
cataaagaatcaatacgggaattgagcttctgtagtacagatttaaaattctgctcctgc
tctgatgacactaccattaaaatatgggacttcgcaaggtgccaagaagagcgttcatta
tctggccatggttgggatgtgaagagtgttgattggcaccctacaaagtctctattagtc
tcaggtggaaaagataatcttgttaaactttgggatgccaagtcaggaaaggagctttca
tcatttcatggacataagaataccgttctctgtgtaaagtggaatcaaaacggtaactgg
gtccttactgcttccaaggatcaaattatcaagctttatgacatacgtgctatgaaggag
gttgagtcattccgagggcatcagaaggatgtgacatcactggcctggcatccatttcat
gaagaatatttcgtcagtggaagctttgatggttcaatatttcattggcttgtggggcat
gaagctcctcaagtagaaatcacaaatgcacatgaaactggtgtttgggatcttgcgtgg
caccccattggctatctcctttgcagtggtagtaatgatcagacaacaaagttctggtgc
agaaataggcctggggactccgctcgtgataaattcaatttaggacaacaaggtttgggt
gatcaacacaatgttcttggtcgcatgcctggtaattttccaggtcctgagcccccatca
actcctggagcatttgcgtctggtatgttacgaacggagggtacaatacctggagttgga
gctgcaatgccactgtctatcccatcacttgattcaccttctcaaggagaacagaagact
tcaatgcctttaggagctcctccccttcctcctggtccacatccatcgcttcttgcaagt
aatcagcagcaagcatatcaacaaaacatgcagcaagctcagcagcagtcactacctcaa
caaatgacttctcttcctttgcaaccaccgaatttgccacagctacagcctccacatatg
cctctaatgccacatcctcatctacctcggccaccacatcaactacaaccagtaaacatg
cccggcattcagtcttcaatgccaggatctggacccatccaaggaatgcctccgatgggg
atacaaggtaacatgaatcagatgggccctccaatgcctcaaggtcattttgttggcatg
cctcctggatctggaccgcagggcaatgttccccctggtggaatgccaaatggattgaac
atgcaaggccctcaaaatgcaggaggcaatcagatgtttccaccagtacgaggcttcaac
aggccacaagctggacagatgccgctcatgcctggacttaatccttatcaggtgaatgac
atcaatctggaaatccaaacacaccacctggaatgcacatgcagtcaaactttggtcatc
aatctggaatgcctccgccactgccgccagggcctccaccacataatcaaggacatcaat
aggccattgtttatagtttcgagctttgctcaagttgtctgttga
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