Solanum pennellii: 107028742
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Entry
107028742 CDS
T04130
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
spen
Solanum pennellii
Pathway
spen03030
DNA replication
spen03420
Nucleotide excision repair
spen03430
Mismatch repair
spen03440
Homologous recombination
spen03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107028742
03420 Nucleotide excision repair
107028742
03430 Mismatch repair
107028742
03440 Homologous recombination
107028742
03460 Fanconi anemia pathway
107028742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spen03000
]
107028742
03032 DNA replication proteins [BR:
spen03032
]
107028742
03400 DNA repair and recombination proteins [BR:
spen03400
]
107028742
Transcription factors [BR:
spen03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107028742
DNA replication proteins [BR:
spen03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107028742
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107028742
MMR (mismatch excision repair)
107028742
DSBR (double strand breaks repair)
HR (homologous recombination)
107028742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
DUF223
DUF936
zf-CCHC_3
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
107028742
NCBI-ProteinID:
XP_015085409
LinkDB
All DBs
Position
8:64278032..64282269
Genome browser
AA seq
901 aa
AA seq
DB search
MPPINLTEGAVEMLSIGEGHPEEFKPVLQITDVRLVNTQNQTNNNERYRLLLSDGTHIQQ
GMLATQKNDLIRSQQIRKGTIIQMNEFVRNVIQNRVIIIIIELDILVDTCDQIGDPKHYV
RADGSAPSVPRPAAPLQPSTNQLGGVSVNPQSFASLSATSGSTPRPNMSGGMQSPEMNRS
SVYNTTSVGNTDSGRYSSGAPLYPRAESGPAISRAPMNYVRPPQPSYQQPPQSSYQQPSP
MYSNRGPIAKNEAPPRIIPIAALNPYQGRWTIKARVTAKTELRHYNNQRGDGKVFSFDLL
DSDGGEIRVTCFNSVADQFYDQIEPGRVYQISKGSLKPAQKNYNHLPNDHEIMLESTSVV
QPCFEDDRAIPQQQFHFRPISDIEAMENNNVIDVIGVVSSISPSSSIMRKNGTETQKRVL
QLKDMSGRSVEVTLWGNFCNAEGQTLQSLCDSGSFPVLAVKAGRVNDFNGKSIGTISTSK
LFIEPDFPEALKTKAWFEREGKNMPSMSLSREVSSVGRTDVRKTISQIKDEKLGTSEKPD
WITISATVTFIKVDNFCYTACPLMVGDRQCSKKVTNNGDGKWRCDRCDQTVDECEYRYIL
QFQIQDHTGLTWVTAFQECGDQIMGVSAKELYFLKYEEQDDDRFAEIMRNVLFNQFIFKL
KVKEEMYSDEQRVKSTVVKAEMLNFQPETRFLFDLINKINGQESSTLTPKTGDATPNSGL
NNAGFGNKLKEPMNPVASYGGSHSGISRDSGLQGNRQGPYGNQLIGSQFAPSGSTAGSIT
RESGLQGNRQGQYGNQPSGTQNAPTGSSTGMYMSCNSCGGTGHSASNCPSMMSGQSQAYG
SGFGNRATSGMSSGAGGGECYKCHQYGHWARDCPGVSNAPAANNMTSGRYGNSPRQHVGG
F
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgattaacttgacggaaggagcagtagagatgctatcgatcggagaaggtcat
cccgaggagtttaaaccggtgctacagatcacagatgttcggttggtgaatactcagaat
cagactaacaataatgaacgataccggcttttgttatcggacggaacgcatattcagcaa
ggaatgttagctacgcagaagaacgatctaattcggtctcaacagattcggaaaggaact
attattcagatgaatgagttcgttcgtaatgtcatccagaatcgagtgatcatcattatt
atcgaattagatattttagttgacacgtgtgatcaaattggagacccaaagcattatgtc
agagctgatggtagtgctccttcggtgccacgaccagctgccccactgcagccttccacc
aatcaattaggtggtgtaagtgtaaacccccaatcatttgcttctctttctgctacttca
ggctcaactccaagaccaaatatgtcaggaggaatgcaatctccagagatgaaccgtagc
agtgtttacaatactacctctgttgggaatactgactctggacgatatagttcaggtgca
cctctttaccctagagcagaatctggtcctgcaatttcacgggctccaatgaattatgtg
cgtccacctcagccttcttatcaacagcctcctcagtcttcttatcagcagccatcacca
atgtactcgaacagaggacctatagccaagaatgaagcacctccaaggattattccaatt
gctgctctcaatccatatcagggtcggtggactatcaaggccagggtaaccgcaaagact
gaactcagacactacaacaatcaaaggggtgatggaaaagtattctcttttgatcttctt
gattctgatggaggagaaataagggtgacttgttttaactctgtagctgaccaattttat
gaccagattgagccaggtagagtgtatcaaatttcaaaaggaagcttgaaaccagctcaa
aaaaattacaatcaccttccaaatgaccatgaaattatgctcgagagcacgtctgtagtt
caaccttgttttgaggatgacagggctattcctcagcagcaatttcattttcggccaatc
agtgacattgaagccatggagaacaacaatgtgatagatgtgattggtgtggtatcttca
ataagtccatctagttcaataatgaggaaaaatggtacagaaactcagaagagagtcctc
cagctgaaggacatgtctggtagaagtgttgaagtaactttgtggggaaatttttgcaat
gcagaaggtcaaacacttcagagtttgtgtgattctgggtctttccctgtcttggcagtt
aaagctggtagagtaaatgattttaatggaaaatctataggtactatatctacaagcaag
ttgtttatagaaccagattttcctgaagctctgaaaacaaaggcatggtttgaaagggag
ggaaagaacatgccatctatgtcattgtcacgagaagtgagcagtgttggtcggacagat
gtgcggaagactatatctcaaatcaaagatgagaagttgggcacttctgagaaaccagat
tggatcactataagtgccactgttacatttataaaggttgacaatttttgctatactgca
tgtcccctcatggtaggagatagacagtgcagcaaaaaagtgacaaataatggggatggg
aaatggcggtgtgacaggtgtgatcagactgttgatgaatgtgaatacaggtatatactt
cagttccagattcaggaccatactggcttaacatgggttactgcatttcaagaatgtggt
gaccagataatgggtgtatctgcaaaagaattgtatttcttaaaatatgaggagcaggat
gatgataggtttgcagaaatcatgcgtaatgtgttattcaaccagtttatatttaaattg
aaagtgaaagaagagatgtatagtgatgagcagcgtgttaagtcaacagtggtcaaagct
gagatgcttaacttccaaccagagaccaggtttctgttcgacctgataaacaagattaat
gggcaggaatccagcactttaactcctaagacaggtgatgcaactccaaattcagggtta
aataatgctggatttgggaataaactgaaagaaccaatgaaccctgttgcaagttatggt
ggcagccatagcggtatcagcagagatagtggactgcagggaaatcggcaaggtccatat
gggaatcagcttattggctcacagtttgctccttctggctctactgcaggcagtattacc
agagaaagtggactgcagggaaatcggcaaggccaatatggaaatcagcctagtggaacg
caaaatgctccgactggctcttctacaggcatgtatatgagctgtaatagttgtggtgga
acaggtcatagtgcttcaaactgtccaagcatgatgagtggtcagagccaggcatatgga
agtggttttggcaatagggcaacttcagggatgagcagtggtgctggtggtggtgagtgt
tataaatgccatcagtatggacattgggcaagagattgcccaggtgtaagcaatgcacct
gctgccaataacatgacatcaggaagatatgggaattctccaaggcaacacgttggtggt
ttttga
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