Solanum pennellii: 107028919
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Entry
107028919 CDS
T04130
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107028919
Transcription machinery [BR:
spen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
107028919
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
HTH_31
Motif
Other DBs
NCBI-GeneID:
107028919
NCBI-ProteinID:
XP_015085648
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Position
8:58423581..58429101
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AA seq
551 aa
AA seq
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MGFRLHLKWGFSLQPPFSSNSSSWPSSHSFKGRETLYDPARSLKPFINGDCEPSHSDPFR
VQTCLSDPQLWTSDASVTIETKTRNGRGSPSNVYGDIGSYKIDGEKPTYINTTKSLHFSL
LMKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRTHHSSTFPKVLDVPREL
IKEVEKDDLVGNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQEDLQQPKF
YSGKRTHASRNKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGRVATFSSWAEAAGIE
QKELQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDH
TRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADD
EIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSVTSPEETVMRQDIV
DNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSA
DYFQHITHYSL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgggttttaggctacatctcaaatggggtttctctcttcagccccctttctcctccaat
tcatcatcatggccttcttcacactctttcaaaggacgggaaactttatatgatccagct
aggtctctcaaaccttttatcaacggcgactgtgagccttcacatagtgatccgttcaga
gtgcagacttgcttatctgacccccaattgtggactagtgatgcatcagtaactatagaa
acaaagacgcgaaatggcagagggtctcctagcaatgtatatggagatattggcagttat
aagattgacggggagaaaccaacatatataaatacaaccaaatctcttcattttagttta
ctaatgaaaaatcttgatctgctggaaaacatgtttgctgattcagagatgtcaagatta
gaaagagatattttggtgcaactagaaaagcttggagctttagaattctttcatacttgt
ctctcaaggacacatcattcttctacttttcctaaggttcttgatgtgccaagggagcta
attaaagaagttgagaaagacgatcttgtcggaaatgcaatggataaggttgtcgtacgt
tctaggaaaaagcaagagcgtatgtcaagaagaaaaagagcatccagaaatgccaatgac
attattacagtgcagccgcataccaaaaatatccaggaggatttgcaacagccaaagttc
tattctgggaaaagaacacacgcctctagaaataaaagacagaaaattgctaagaatgag
gcggagatgtcaaaaggtgttaagttggtggcacaattggaaaggatcaggtcaatcctt
gaagaagaaactggtcgagtagctactttcagtagctgggcagaagctgctgggattgaa
cagaaggagttgcagcaacacttgcattttggttggtattgcagggatgagcttctgaaa
agtacacggtccttagtcttatatctggcaagaaactacagggggcttggagtggcattt
gaagacttaattcaggctggaaacatgggtgttctacaaggtgctgtaaggtttgaccac
actaggggatacaaattctcgacttacgttcagtattggatacgaaaatcattgtcaaaa
ttggtggcacaacatgctagaggggttcgaattcccttcactatatgcaaagtaataaat
caaatacataaagctcgaaaaactctcagtaggagccatggcaaatttccagctgacgat
gaaattgccaagttcacaggtctatccacagctagaattgcaatggctagtaaatgtctg
agagttgttggttcaattgatcagaaagttggagattgcatcagcgcaaaagttctagag
cttacacctgataaatcggttacaagcccagaggaaactgtcatgaggcaagacatagta
gacaacatgtatgcacttttggaaagcttggatccaaaagagcagcaagtaatatatttt
aggtttggtcttgaaactcatcaacgcaagtcactcgaggagattgggaggctttatgga
gttagtaaagaatggattaggagaatagaacgaagagctctcaccaaattaagaagcgcg
gattatttccaacatataactcattactctctgtag
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