Solanum pennellii: 107028951
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Entry
107028951 CDS
T04130
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107028951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107028951
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107028951
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_11
BACK
Motif
Other DBs
NCBI-GeneID:
107028951
NCBI-ProteinID:
XP_015085687
UniProt:
A0ABM1HHQ0
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All DBs
Position
8:66019372..66025257
Genome browser
AA seq
1083 aa
AA seq
DB search
MDSGDVSLPRRRTRQQLLKYWVELIDKRNSLGRTGNPTQSSTCSVNIGEDESCGRKRDRV
EENTDSADGKRKMGKSEDGSMVKVDNGRSNFSPGTCESITKPPFIHDISDDDGEEGKEND
VLIGEAAAGSAVNTGSCSVSWSNVGYVGLRSPMLNVADEVVSSTSSMCWTAEKSEEVADT
IASSESESEASSDEDNDDSEDENYQVKESSSSSESDDVRSYTLKDDEESKDGNTSKDDDL
SCPTEQEHHEEGNKESNGEELVPQLAVKGEKNNKGRSYLLRPRSLPKSKKKKLNHGNCSS
PILLTESSSEEDCDVDESVQNVVQKDAVRKVRKTRKKILKDSEFLKLVVDSMINVDDHDE
LTLPEEKEEKEQVPVKETLPLIFRFEDEEPLPPEKEEWEKGVDDLFVEMDMCILESRIGF
TNPSDSPIQSEKTSGCQMGNHQLVLDEQIGLICKVCSHVHLESKYIFPPFAERTRGRHER
KYFGESPSLLDVDDFKFYDSSAVHDAAIYGEGTVWDLVPLSAKTTMYPHQREGFEFMWKN
IVGDMYLEKLKEPISGNRGGCIISHPPGTGKTRLTIVFLQAFLKQFPKCRPVIIAPSNLL
LNWEAEFQKWEVDIPFHNLNSKDFSSQEDEATVSVFHCLSRAGKNNPHLIRMVKLRSWAK
SKSVLGISYDLFRILTGEDGDSYATEIREILLKLPGLLVLEEGHTARNDQSLVWKALNKI
ETEKRILLSGTPFQNNIKELYNTLCVVSPKFAADLEHKWAYLSSSIDKNVRALEELRDMI
APLVHKCSENVKKVSLPGIRDIVIHLKPTHLQKELLKRIPEFPGSFYEQNMVSLISVHPS
LVATRKEFADLESQLKERGCRLDPDNGVKMKFVVELIRLCGGLKERVIIFSQLLDPLNLI
KEQLHSLFGWTLGREILYMDGKLDVKQRQISINSLNDPKSDVKVLLASIKACSEGISLIG
ASRVVLLDVLWNPSVEQQAISRAYRNGQTKFVHVYCPVSSKWEVDKIEQQTKKKYHSDVI
MSRNKVNTFKMDPSCSVSEDTILESMVKHECLRHIFEKLSHAPRVVPPTTCFNSCNRPSK
LSC
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggatgtgtctcttccaagaaggaggactagacagcaattgttgaaatat
tgggttgagttaattgataaaaggaatagtttgggtcgaactggtaatcctactcagtct
tcgacttgttcggtgaatattggagaggatgagagttgtgggaggaaaagagatagggtg
gaggagaatacagattctgcagatggcaagagaaaaatgggaaaatcagaagatggaagt
atggtaaaggtagacaatgggaggagtaacttcagcccaggaacttgtgagtccattacg
aaaccgcctttcatccacgatatatctgatgatgatggggaggaggggaaggagaatgat
gttttaattggggaggctgctgcaggctctgctgtaaatactggatcatgttcagtatct
tggtccaatgtggggtatgttggattaaggagtcctatgttgaatgtagcagatgaggtt
gtttcatctacctcaagcatgtgttggacagcggagaaatcagaagaggttgctgataca
attgcatcttcggagtcagaatctgaagcttcaagtgatgaggataatgatgactccgag
gacgagaattaccaggtgaaagaatcatcaagttctagcgaatctgatgatgtaagaagt
tatacattgaaagatgatgaggaatcaaaagatggtaatacatcgaaagacgatgatctg
agttgtccaacagagcaagaacaccatgaagaaggaaacaaggagtcaaatggtgaggag
ctagtacctcagcttgctgttaagggtgaaaagaacaacaaaggtcgatcatatcttctt
cggccgcgctcacttcctaagtccaaaaagaagaagttaaaccatggaaattgtagcagc
ccgattcttcttactgaatcctcgtctgaggaggactgtgatgttgatgagtcggtgcaa
aatgttgttcaaaaggatgctgttcgaaaggtgagaaagactcggaagaagattcttaaa
gattctgaatttctgaagttagttgttgattctatgataaatgttgatgatcatgatgaa
ctaactcttcctgaagagaaagaagagaaggaacaagttcctgtcaaagaaacacttcct
ttgatattccggtttgaagacgaggaacctcttcccccagagaaagaagaatgggaaaag
ggagttgatgatctttttgttgaaatggacatgtgtatcttagaatcacgtattggcttt
acaaatccatctgattcaccgatacaaagtgaaaaaacaagtggctgtcagatggggaac
caccagcttgttctagatgaacaaattggactcatctgtaaagtttgttcccatgtgcat
ttggagagcaagtacatcttccctccatttgctgagagaacccgagggaggcatgaaaga
aaatattttggagagtcgccatccctcttggatgttgacgacttcaaattttatgattct
tctgccgttcatgatgctgctatttatggggaaggaactgtgtgggatttagttcccctt
agtgccaaaacaacaatgtatcctcatcagcgtgaaggatttgagttcatgtggaaaaac
attgttggagatatgtatcttgagaagctgaaagagcctatatctggtaataggggagga
tgcataatctcacacccacctggcacaggaaaaacccgtctcactatagtatttcttcag
gcatttttgaagcagtttccaaagtgtcggcctgtaatcatagctccatccaatttgctt
cttaactgggaagccgagttccaaaaatgggaggtcgacattcccttccacaacttgaac
agcaaagatttctcttcccaggaagatgaagctactgttagtgtcttccactgtttatcc
cgtgccggaaaaaacaatccacaccttatacgtatggtgaagctgagatcctgggctaaa
agtaagagtgttttgggaatcagttatgacttgttcaggattctcacaggagaagacgga
gacagttatgccacagagattagagaaatacttctaaagttacctggtcttctggtcctt
gaggaagggcacactgctcggaacgatcaaagccttgtgtggaaagctttgaataaaatt
gaaacagagaagcgcatactcttgtctggaactccgttccagaataacatcaaagagttg
tacaacaccttatgcgtagttagtccaaaatttgctgcagatttggagcataaatgggct
tatcttagcagttccattgacaagaatgtcagagcattggaagagcttagggatatgatt
gcaccactagtccataaatgtagtgaaaatgtgaagaaggtaagccttccgggtataagg
gatattgtgatacatttgaagcccacacatttgcagaaggagttgcttaaaagaattcca
gagtttccaggctccttttacgaacaaaatatggtgtctctaatctctgttcatccttca
ttagtggcaacgaggaaggagttcgctgacttagaaagtcagctaaaagaaagaggatgt
cggttggatccagataatggagtaaaaatgaaatttgttgttgaactaatcagactctgt
ggtggattgaaggagagggttataatatttagccagttacttgatcctctaaacttgatc
aaggagcaactccattctctctttggctggactttaggccgagagatcctctatatggat
ggaaaacttgatgtaaagcagcgacagatatcaataaattctcttaatgatcctaagagt
gatgtaaaagtgcttcttgcatcaataaaagcctgttcagaaggaataagtcttataggg
gcctcaagagtggttttgcttgatgttctctggaatccctcagtagaacagcaagccatc
agtcgagcctacagaaatggtcagactaaatttgttcatgtttactgcccagtgtcgtca
aaatgggaggtggacaagatcgaacagcagacgaaaaaaaaatatcattcagatgtaatt
atgtctaggaataaagtgaatactttcaagatggatccttcatgttctgtgtcagaggat
accatactagaatccatggttaagcatgagtgcctccgtcatatttttgaaaaactatct
catgcaccacgtgtggtgcctcctactacatgctttaactcttgtaacagaccttcaaaa
ctgagctgttag
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