Solanum pennellii: 107029016
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Entry
107029016 CDS
T04130
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 34 isoform X1
KO
K10899
ATP-dependent DNA helicase Q1 [EC:
5.6.2.4
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spen03400
]
107029016
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107029016
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
107029016
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
RQC
Motif
Other DBs
NCBI-GeneID:
107029016
NCBI-ProteinID:
XP_015085783
UniProt:
A0ABM1HHY6
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Position
8:complement(62897160..62936649)
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AA seq
715 aa
AA seq
DB search
MGRTEELLEELVNVEVELQDVQDQIKYLLDRQEKLHERQFELKALVESCESSSGRASDDA
AVPVDDWSRPFEWDSQADDIRFNVFGISKYRANQREIINTIMSGRDVLVIMAAGGGKSLC
YQLPAVLRDGVALVVSPLLSLIQDQVMGLAALGIPAFMLTSTTTKENEKFIYKALEKGGD
ELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISVDEAHCCSQWGHDFRPDYKNLGILK
TQFPNVPMVALTLDLDAFFQATATKKVQDDLMEMLHIPRCVKFVSSVNRPNLYYMVREKS
SIAKTVVDEIAEYIQSSYPNNESGIVYCFSRKECEQVAQELRERGISADHYHADMDVNAR
ERVHLRWSNGKLQVIVGTVAFGMGINKPDVRFVVHHSLSKSMETYYQESGRAGRDGLPSE
CVLFFRPADAPRQSSMVFYENSGLKNLYDIVRYCQSKRECRRSAFFRHFAEPLQECNGMC
DNCAFSNEVEELDVSSHAKLIVSMLKDIQENDQRVTMLQLVEKLKVKQKNLGPDLKKDEL
EQLVIKLVLDHVLKEEFQHTAYATNAYVTVGPLAKQVLQGNKIMKVELSTRQTKTSSSMK
SSKRERSTGLNDKLEELRKELASIHGGIFPHSVLSTQQISTLSAQKPKSIEELEKIIGKL
KTEKYGGRILEEIASYESDPQKNDADGSKETKGNTVKKLKTKKALVVLESSEDET
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaaccgaagaactcttagaggaacttgtcaatgttgaagtggagcttcaagat
gttcaagaccaaataaaatatctgctagaccgacaagagaaattgcatgagagacaattc
gaacttaaagctcttgtggaaagttgtgaatcatctagtggccgggcttccgatgatgct
gctgttccagtagatgattggtccaggccgtttgagtgggactctcaagctgatgacatt
aggtttaatgtttttggcatatctaaatatcgtgcaaaccagcgagagataataaacaca
ataatgagtggaagggatgttctagtaattatggctgctggtgggggcaagagtctttgc
taccaacttccagcagttctgcgggatggcgtggctcttgttgtcagtcctttgctttct
cttattcaagatcaggtcatggggttggcagctttaggcattccagctttcatgttaacc
tcaacaactaccaaggagaatgagaagttcatctacaaggcattggagaagggcggggat
gagcttaaaatattgtatgttacacctgaaaagatatcaaagagcaagagatttatgtca
aaacttgaaaagtgtcaccatgctggtcgtctttctctaatttcagttgatgaggcacat
tgctgtagccagtggggccatgatttccgtccagattacaagaatcttggtatattaaag
actcagtttcctaatgttcccatggtcgctctaacactggacttggatgcttttttccag
gcaactgcaacaaagaaagtacaggatgatctgatggagatgcttcacattccaagatgt
gttaagtttgttagttcagtgaacagacccaacctttattacatggtacgtgagaagtca
tctatagcaaagacagtggttgatgaaattgctgaatatattcaatcatcatatccaaat
aatgaatctgggatagtttattgcttttccaggaaggagtgtgaacaggttgctcaagaa
ttacgtgaaaggggaatttcggctgatcactatcatgcggatatggatgtgaatgctcgt
gagagagttcatctaaggtggagtaatggaaagctgcaagtcattgtggggacagtggca
tttggtatgggtattaacaagccagatgtcagatttgtcgtccatcacagcttgagcaag
tcaatggagacttactaccaggaaagtggccgagctggaagggatggacttccttctgaa
tgcgttcttttctttagacctgctgatgctcctaggcagagttctatggtcttctatgag
aattctggactaaaaaatctatatgacatagtacgatattgtcagtctaaaagagagtgc
cgtcgaagtgctttcttccgacactttgctgagcctttacaagaatgcaatggaatgtgt
gacaactgtgccttttcaaatgaggtggaagagctggatgtctcgagccatgcaaaactc
attgtgtctatgctgaaagatatacaagagaatgatcaaagggttacaatgttgcaattg
gtggaaaaactaaaggttaagcagaagaaccttggtcctgatctgaaaaaagatgaattg
gagcaacttgtcatcaagcttgttttggatcatgttcttaaagaagaatttcagcataca
gcctatgcaacaaatgcatatgtcacagtaggacctctggcaaagcaagtattgcaaggt
aataaaattatgaaggttgagttgtcaactagacagacaaagacctcaagcagtatgaaa
tcatccaaacgagaaagatcaacaggattgaatgataagcttgaagagttgcgaaaggaa
ctcgcatccatccatgggggaatattccctcattctgtattatctacacaacaaatcagt
accttgagtgcacagaaaccaaaatcaattgaagagttggagaagataattggcaagttg
aagactgaaaaatacggaggcagaattcttgaagagattgctagttatgagtctgatccc
caaaagaatgatgcagatggaagcaaagagaccaaaggcaatactgttaagaagttgaaa
accaagaaagctcttgtagtccttgaaagtagtgaagatgaaacatga
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