Solanum pennellii: 107029020
Help
Entry
107029020 CDS
T04130
Name
(RefSeq) probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X1
KO
K15264
25S rRNA (cytosine2278-C5)-methyltransferase [EC:
2.1.1.311
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spen03009
]
107029020
Enzymes [BR:
spen01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.311 25S rRNA (cytosine2278-C5)-methyltransferase
107029020
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Other ribosome biogenesis factors
107029020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
NSUN5_N
NSUN5_fdxn-like
FtsJ
Methyltransf_31
ASPP2-like_RA
Ubie_methyltran
RASSF8-10_RA
PCMT
Motif
Other DBs
NCBI-GeneID:
107029020
NCBI-ProteinID:
XP_015085791
LinkDB
All DBs
Position
8:complement(55208369..55219020)
Genome browser
AA seq
490 aa
AA seq
DB search
MDITRRLEIMVRKKAQRDTKPSAKKPNQNRMSSAERSALFARREAAKVLRTILQGDARRR
AVGTIKSLVYSPSVRNKRATYALVCQTLKYLPVIKDVFHTTNVLSSKWKRQEELMYIILY
DILFSQEVLLAGDAEKFLLQKKDVLQAALAKLLVQKKVKHVSDLMTSYKISDLPKPRYAR
VNTLKMDVESALVEFKKQYEVCQDAMVPDLLILPPRTDLHDHPLVKSGSVFLQGKASSMV
AVALGPKPRWEVIDACAAPGNKTVHLAALMKGNGKIIACELNKERVKRLKDTIELAGATN
VEIKHEDFLNISPEDPAYSKVQAILLDPSCSGSGTVVDRLDHLLPSYTTDSDVNRLEKLA
AFQRKALEHALSFPAVERIVYSTCSVNQVENEDVIKSVLPLASSYGFELTTIFPQWARRG
HPIFDGSQHVLRTDLIEDQEGFFIALFVRKGVSPPAKHIRDVGNTLRALQRRKRRKINSF
FLLKTLGLLL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaccaggagactcgaaatcatggtgcggaagaaggcgcaaagggataccaaa
ccgtcggcgaagaagccgaaccagaaccgtatgagcagcgctgagcgctcggcactcttt
gcacgtagagaagctgcaaaggttttgcgaactattctacaaggagacgctcgacgtcga
gccgttggcaccatcaagtcgctggtttatagtccctctgtcaggaacaaaagagctact
tatgctttggtttgtcaaactctcaaatatcttcccgttatcaaggatgtctttcacact
accaatgtgctgagtagcaagtggaagaggcaagaagaattgatgtacataatcttgtat
gacatcctttttagccaggaggttttgttagctggtgatgcagaaaagtttctactgcag
aaaaaggatgtgttgcaggcagcacttgccaagcttttagttcaaaagaaagtaaaacat
gtctcagatttgatgacttcttataagatttctgaccttccaaaaccccgttatgctcgt
gtaaatactctgaaaatggacgtagagtctgccctagtcgaatttaagaaacagtatgag
gtttgtcaggatgcaatggttcctgacctgttgattttacccccaaggactgacttgcat
gatcatcctttggtgaaaagtggaagtgtctttctgcagggtaaggcaagttccatggtt
gcagttgctcttgggcctaaacccagatgggaggtcattgatgcatgtgcggcaccaggg
aacaaaactgttcatctagctgctcttatgaagggaaatggaaagataatagcttgtgaa
cttaataaagaaagggttaaacgtctgaaggacacaattgaactggctggagcgactaat
gtggaaatcaagcatgaggacttcttaaacatcagtcctgaggatccagcatactcgaag
gttcaagcaatactgttagatccatcatgttcaggctctgggactgttgttgatagatta
gatcacctgctcccctcatatacaacagactctgatgtcaatagactagaaaagctcgcg
gctttccagagaaaggctttggaacatgcattatcttttccagctgttgagagaattgtt
tacagtacatgttctgttaaccaagttgagaatgaagatgttatcaaatctgttctgcct
ctcgcttcgtcttatggttttgaactgacaacaatctttccccagtgggctcgccgaggt
catccaatttttgatggatctcaacatgtgcttagaaccgatctcatagaggatcaggag
ggcttctttattgctttatttgtcaggaagggtgttagccctccagccaagcacatcaga
gatgttggaaacacattacgagctcttcaacgaagaaaaaggagaaagataaattctttt
ttcctcctcaaaactttgggtttgttattgtaa
DBGET
integrated database retrieval system
