Solanum pennellii: 107029035
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Entry
107029035 CDS
T04130
Name
(RefSeq) decapping nuclease DXO homolog, chloroplastic
KO
K14845
RAT1-interacting protein
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spen03021
]
107029035
03009 Ribosome biogenesis [BR:
spen03009
]
107029035
Transcription machinery [BR:
spen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107029035
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
107029035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAI1
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
107029035
NCBI-ProteinID:
XP_015085817
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All DBs
Position
8:complement(66081088..66088870)
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AA seq
554 aa
AA seq
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MEAKMTNRLKRLFGEEEDDEDEQQEEENYSNHQDEEEQRQRQDSNRSSPSSASQSSTSTS
SGAAGAAASSSSSSGSSSHSSSSNRSRSSGSGSGTGSEREADEDDTGEVISHSNNDYNNN
NSSGYHQNEEDDDDYKDLFGSDNEDYAKTLSKSRFPVPVLPPIRNNNHQPRGGIGRGRWQ
NDRGAGILPRPGPYPPRQNYGYGSKFFNGHRDERFVSELKFAKSEETLARKCIAFQEPCE
LACFSRVEGGDVFFDDRSLRLFKRLITEDVGADLNQGFDTFTEKKDLGSQGFGDLLASIR
NKNIPLDRMHFVTYRNNLNKIMATAYLRNEPWEMGVHKRKGVVYLDVHKLPERPQSVLDR
RRCYWGYCFESLATEDPRRSDGEGIHHVDANVEFCSVVKTKLGAHRVLMGAEMDCCDSTD
DGRRFYVELKTSRELEYHTEEKYEREKLLKFWIQSFLAGVPYIVVGFRDDAGRLVRTERL
RTKDITHRVKMKNYWQGGVCLAFADEVLCWLYGTVKENEDYILQFTPHSARLELLQAQSC
PDAITEHVQLLNSS
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgaagatgacgaatcgcttgaaacgtttatttggtgaagaagaagatgatgaa
gacgaacaacaggaagaagaaaactattcaaaccaccaagatgaagaagaacaaaggcaa
cggcaagacagtaatcgatcatcaccatcttcagcatcacagtcatcaacatctacttct
tcaggcgccgccggcgccgccgcatcttcatcgtcttcatcgggttcttcttcgcattct
tcatcgtctaacaggagtagaagtagtggtagtggaagtgggactggtagtgaaagagaa
gcagatgaggatgatactggcgaagtgatttctcatagtaataacgattataataacaat
aatagtagtgggtatcatcagaatgaagaggatgatgatgattataaggacctttttggg
tctgataacgaagattatgctaaaacactttccaagagtcgtttcccagttcctgtttta
ccccctatacgtaacaataaccaccaaccaagaggaggaattggccggggtcgctggcaa
aatgatagaggagccggcatccttccgcgaccgggaccttatcccccaaggcagaactat
ggttatggttccaagtttttcaatggccatcgtgatgaacgctttgtgtctgaattgaag
tttgcaaagagtgaagaaacattagcaagaaaatgtatagcttttcaagagccatgtgaa
cttgcgtgcttcagtcgagttgaaggtggagatgtcttctttgatgatcgcagcttgagg
ctattcaagcgtctaattactgaagatgttggggcagacctgaatcaaggttttgacact
tttaccgagaagaaagatttgggttctcaaggttttggcgacttattggccagtatcagg
aataaaaatattccacttgatagaatgcatttcgtgacttaccgcaacaacctcaataag
ataatggctactgcttatctcaggaatgaaccttgggaaatgggagtgcacaaaagaaag
ggggttgtgtatcttgacgtacataaactgccagaacggccacagagtgtgcttgaccgg
agaaggtgttactggggatattgtttcgagagccttgcaacagaagatcctaggcgatct
gatggagaagggatacatcatgttgatgccaatgttgagttttgttctgtagttaagaca
aaattaggagcacatcgtgttttaatgggggctgaaatggactgctgtgattcaactgat
gatgggaggaggttttatgtggaattaaagactagtcgcgagctggaatatcataccgag
gaaaaatacgagagggagaaattgctcaagttttggatccagtcatttctcgcgggtgta
ccttatattgttgttggttttagggatgatgctggtcgtcttgtccgcacagaaagattg
agaactaaagatattacacacagagtaaaaatgaaaaattactggcagggtggagtatgc
ttagcatttgcagatgaagtcttgtgctggctctacgggacagtaaaagaaaatgaagac
tacatattgcagtttacgccacattctgctcgtttggagcttcttcaagctcagtcctgt
cctgatgcaataacagaacatgttcaactgttaaattcttcgtaa
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