Solanum pennellii: 107029219
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Entry
107029219 CDS
T04130
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107029219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107029219
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107029219
mRNA degradation factors
5'-3' decay
Decapping complex
107029219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
107029219
NCBI-ProteinID:
XP_015086069
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Position
9:complement(3789436..3798827)
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AA seq
365 aa
AA seq
DB search
MSSNSKLMPNLDERSTKMLNLTVLQRIDPRIEEILITAAHVTLYEFNVDLNQWSRKEVEG
SFFVVKRSAQPRFQFIVMNRRSAAENMVEDLLGDFEFEVQVPYLLYRNAAQEVNGIWFYN
AHEIEEVADLFGRILGEYSKVPLKPQLRKSEFTDHEVVPMSTAIEGTPGPAFTTSTDGFG
ADDSSFMNFFNSAATIGHTSSTVVNSGLPYHYPVTTFDPSPRVPSPLPSPAPISQVSLPV
QSAPSPPRQSRRDSANLINSSNYPANLVKPSFFTPPVSPVLVTTSVSSATSTPVLYPHVN
PQRPHGTLLVQPFRTPTSPPFLTSTQIPPQSVTLSREKVQDVLLMLVQDNQFIDLVYQKL
LKAHS
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgaattcaaagttaatgccgaatctggatgagcgaagtacgaagatgctgaac
ctcactgtgctacagagaatcgatccgcgtattgaggagatcctcatcacagctgctcat
gttacgttgtacgagttcaacgtcgacctcaatcaatggagccgcaaggaggttgaaggt
tctttctttgtagttaagaggagtgctcagccaaggttccagttcattgttatgaaccgc
aggagtgcagcagaaaatatggtggaagatctcttgggagactttgagtttgaggttcag
gttccatacttgttgtatcgcaatgcagcccaagaagtcaatggtatttggttttacaat
gcacatgaaattgaggaggttgcagatctcttcggcagaattttaggtgaatactcaaag
gttcccctgaagccacagctaagaaaaagtgagtttacagatcatgaggtggtcccaatg
agtacagcaatagaagggactcctggaccagcatttaccacctctacggatgggtttggt
gctgatgattcttcctttatgaactttttcaatagtgctgcaactattgggcatacctct
tcaactgttgtgaactccggactgccatatcattatccagttacaacttttgatccatca
ccccgagttccaagtcctctgccttctcctgctccaatttcgcaagtctcattacctgtt
cagtcagctccatcacctcctcgacagtcacgccgcgattctgctaacctgatcaatagt
tctaattaccctgcaaatcttgtgaagccttctttctttacacctcctgtgtcacctgta
ttggtgacaacttctgtctcctcagctacatcaactcccgtcctttatcctcatgtgaat
ccacaacgcccacatggtacacttctagttcaacccttccgaacacctacttcgcctcca
tttctcacttctactcagattcctccacaaagtgtgacactaagcagagagaaggttcaa
gacgtgcttctaatgcttgttcaggacaatcagtttatcgacttggtctaccaaaagttg
cttaaagcacattcatga
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