Solanum pennellii: 107029268
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Entry
107029268 CDS
T04130
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107029268
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107029268
Spliceosome [BR:
spen03041
]
Complex C
Other components
Complex C specific factors
107029268
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
ResIII
AAA_7
AAA_29
AAA_11
nSTAND3
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
107029268
NCBI-ProteinID:
XP_015086134
LinkDB
All DBs
Position
9:complement(83464265..83476633)
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AA seq
693 aa
AA seq
DB search
MSQFWKPGTERPRLVDDEEGGVLLYATSSSSSSGFGYGSLEKQRQRLPVYKYKTAILYSV
ETHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRMIACTQPRRLAVQAVATRVAEEMDVK
LGEEVGYTIRFEDITNEELTRVKFLTDGVLLREMMDDPLLSKYSVIMVDEAHERSLSTDI
LLGLLKKIQRRRPELRIIISSATIEAKSMAAFFNTRICRRRREEEQGPTKEPAILSVEGR
GFNVELFYVDDPVSDYVQSAVSTVMSIHDQERMGDILVFLTGQDDIDTAIQLLTEEAQSS
GKQGLVSVPLYSGLPRADQDLVFSPTPRGKRKVIFSTNIAETSLTLEGIVYVVDSGFSKQ
RFYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCFRLYTEDYFSNEMSVVGIPEIQR
SNLVSCVIQLKALGIDNILGFDWPASPSPESMIRALEILYSLGVLDDDAKLTSPTGFQVA
EIPLDPLISKMILASCEFGCSEEIITIAAVLSIQSIWIPVRGVQKQLDEAKLRFAAAEGD
HVTFLNVYKGFIQSNKSSKWCHKNFINYHAMRKVIEVREQLKRITQRLGIGLKSCEGDIQ
AVKKAITAGFFANAARLEPFSHNGMYKTLRTSQEVYIHPSSVLFRVNPKFIVYHSLVSTD
RQYMRNVITIDPSWLTEAAPHFYQKQLHSSIPQ
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaattttggaaaccaggaactgaacggccccgtcttgtagatgatgaagagggt
ggtgttcttctctatgctacatcttcctcatcttcctctggatttgggtatgggagttta
gagaagcaaaggcagaggttgcctgtgtataagtacaaaactgctattctttactcagtg
gagactcatgctactaccattattgttggagaaactggaagtggaaaaacaactcaaatt
cctcagtacctgaaagaagctggttgggctgagggagggcgaatgattgcttgtacccaa
ccaaggagattggcagtccaggcagttgctacaagagttgctgaagaaatggatgttaaa
cttggtgaggaagttggttatactattcgatttgaagatatcacgaatgaggaattaact
agggtcaaatttcttactgatggggttttgctgagggaaatgatggatgatcctctattg
agcaagtatagtgtgattatggtagatgaagctcatgaaaggtctctctcgacggacatc
ttattgggactactgaaaaagattcaaaggcgtcggcctgagctgcgtattataatatca
tcagctacgattgaagcaaaatcaatggctgctttctttaatacgagaatttgcagaaga
cgacgggaggaggagcaaggaccaacaaaagaacctgctattctgtcagttgagggtagg
ggatttaatgtggagttattctatgttgatgatcctgtttctgattacgttcagtctgct
gtttcaacagtgatgtcgatccatgaccaggagcggatgggagatatcctggtgtttctc
accggtcaagatgatattgatactgcaatacaattgctcactgaagaagcccaaagtagt
gggaagcaaggactggtttctgtgccactatactcgggacttcctcgagcagatcaggac
cttgtgttttcccctactcccagaggaaagagaaaagtgatattttccacaaatattgct
gagacgtcattgactctagaaggtattgtctatgttgttgatagcgggttctcaaaacaa
cgtttctacaatccgatttcagatattgagaacttggtagtggcaccaatatcaaaggca
tctgctcgacaaagggctggtagagctggaagagttcgaccaggaaagtgttttaggctc
tacacagaagattacttttccaatgagatgtctgtggtgggaatccccgagattcaaagg
tcaaaccttgtttcctgtgtcatccagttgaaggctttgggcattgataacattttaggt
tttgattggccagcatctccatcacctgaatcgatgatcagagcacttgaaatattgtac
tcacttggagtactagatgacgacgccaaacttacttcacctactggatttcaagttgca
gagattccactggacccattaatatccaaaatgatcttagcgtcttgtgagtttggatgt
tcggaggaaataattaccattgctgctgtactctccatacagtctatttggattcctgtt
agaggagtacagaagcagttggatgaagctaaattgagatttgcagctgccgagggtgac
catgtcacattcttaaatgtgtataaaggattcattcagtctaataaatcttcgaagtgg
tgtcacaagaattttataaattatcatgccatgagaaaagtaattgaagttagggaacag
ctgaaaaggattacacagaggttgggcataggattgaaatcttgtgaaggggatattcag
gcagtaaagaaggcaattacagcaggtttttttgccaatgctgcccgcttagaaccattc
agtcacaatgggatgtacaagactctcagaacttctcaagaagtgtatattcatccttca
tctgtgttgttcagggtcaacccgaagttcatcgtgtaccattctctcgtttcaacagat
cgtcagtacatgcgaaatgtcatcactatcgatccttcttggctaacggaggctgcacct
catttttaccagaagcagctgcatagttctattcctcaatga
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