KEGG   Solanum pennellii: 107029358
Entry
107029358         CDS       T04130                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
spen  Solanum pennellii
Pathway
spen03018  RNA degradation
spen03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107029358
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107029358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107029358
   03041 Spliceosome [BR:spen03041]
    107029358
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107029358
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107029358
Spliceosome [BR:spen03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107029358
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 107029358
NCBI-ProteinID: XP_015086238
LinkDB
Position
9:3222936..3226673
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVVGTLKGYDQLLNLVLDEAVEHLRDADDPLKT
TDQKRSLGLIVCRGTAVMLVAPTDGTDEISNPFVQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtctggcagaaaagaaacagttttagatttggcaaaatttgttgacaagggtgtgcaa
gtcaagcttactggtggaagacaagtggttggaacacttaaaggctatgaccagctgctt
aatcttgtcttggatgaagccgtggagcaccttagagatgccgatgatcccctgaagact
accgatcagaaacgaagtcttggcttaatagtctgtaggggtactgcagtaatgctcgtg
gctccaactgatggtacagacgagatatcgaatccttttgttcagccagacggggcatag

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