Solanum pennellii: 107029358
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Entry
107029358 CDS
T04130
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107029358
09123 Folding, sorting and degradation
03018 RNA degradation
107029358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107029358
03041 Spliceosome [BR:
spen03041
]
107029358
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107029358
mRNA degradation factors
5'-3' decay
Lsm complex
107029358
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107029358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
107029358
NCBI-ProteinID:
XP_015086238
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Position
9:3222936..3226673
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AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVVGTLKGYDQLLNLVLDEAVEHLRDADDPLKT
TDQKRSLGLIVCRGTAVMLVAPTDGTDEISNPFVQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtctggcagaaaagaaacagttttagatttggcaaaatttgttgacaagggtgtgcaa
gtcaagcttactggtggaagacaagtggttggaacacttaaaggctatgaccagctgctt
aatcttgtcttggatgaagccgtggagcaccttagagatgccgatgatcccctgaagact
accgatcagaaacgaagtcttggcttaatagtctgtaggggtactgcagtaatgctcgtg
gctccaactgatggtacagacgagatatcgaatccttttgttcagccagacggggcatag
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