Solanum pennellii: 107029928
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Entry
107029928 CDS
T04130
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107029928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107029928
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107029928
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107029928
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
AAA_22
DEAD
AAA_19
ResIII
T2SSE
nSTAND3
AAA_30
AAA_16
PhoH
ABC_tran
SRP54
Motif
Other DBs
NCBI-GeneID:
107029928
NCBI-ProteinID:
XP_027767529
UniProt:
A0ABM1UVL1
LinkDB
All DBs
Position
9:complement(4574981..4590285)
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AA seq
911 aa
AA seq
DB search
MTILILYYSPLANSPESMAFSPDANAESNSMPCKKKFRKRIVEAEDDEVRRVRGRSSNDN
SDSEEEILRDQRDRDELERHIRERDAARTRKIAEPKLSIKEEEEQANDIGTLRKNSRREY
LKKREKKILDELKDEIEDEQYLFKGVNFTEAEKRELTHKQKIIELVSKDIDCVNEYRMPD
SYDQEGGVDQNKRFSVALQIDRDSDTTRAEQNVWEEHQIGKQRSEEYQFVFEDQIEFIQE
SMMEGVNVDQELPIESIQKSALEKLQEDRKSLPIYSYREDLLQAINDHQVLVIVGETGSG
KTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAARVSHEMGIKLGNEVGYSIRFEDCTS
EKTTLKYMTDGMLLREFLGEPDLASYSVIMIDEAHERTLSTDILFGLVKDVARFRPDLKL
LISSATLDAEKFSDYFDCAPIFKIPGRRFSVEIHYTKAPEADYMDAAVVTALQIHVTQPP
GDILIFLTGQEEIEAAEEIIKHRIRGLGSKIAELIICPIYANLPTELQAKIFEPTPEGAR
KVVLATNIAETSLTIDGIKYVIDPGFAKMKSYNPRTGMESLQVTPISKASANQRAGRSGR
TGPGKCFRLYTAHNYMNDLADNTVPEIQRTNLANVVLSLKSHGIVELLNFDFMDPPPSEA
LLKALELLFALGALNKLGELTTIGRRMAEFPLDPMLSKTIVTSDKYKCSDEIISIAAMLS
VENSIFYRPKDKQVHADNARLNFHTGNVEDHIALLKVYNSWKETNFSTQWCYDNYIQVRS
MKRARDIRDQLEGLLERVEIKLTSNVNDLEAIKKSITSGFFPHTARLQKAGSYRTVKHPQ
TVNIHPSSGLSHELPRWVVYHELVLTSKEYMRQVTELKPEWLVEIAPHYYQLKDVEDSSS
KKMPRGIGRAP
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgactattctgattctttactattctccgctagcaaattcaccggaatcaatggcgttt
agtcccgatgctaatgctgaaagtaattctatgccctgtaaaaagaagttcaggaagagg
attgttgaggccgaggacgatgaagttagacgagttagaggacgatcttctaatgacaat
tctgattcagaagaagagattcttcgggatcagagagatagagacgaattggaacgacat
atcagagagcgagatgctgccaggactagaaaaatcgcggagccaaaattatcaataaag
gaggaagaagaacaggcaaacgacattggaacattaaggaaaaattcgagacgagaatac
ttgaagaaaagggagaagaagattctagatgagcttaaagacgaaattgaagacgagcaa
tacttgtttaagggagtgaatttcactgaagcagagaaacgcgagttaacacataagcaa
aagattattgaacttgtatcaaaagatattgattgtgtgaacgagtacagaatgcctgat
tcgtatgatcaggaaggcggtgtagatcagaataagagattctccgtggctttgcagatt
gacagggattcagatactacgagagcagaacaaaacgtgtgggaagaacatcaaattgga
aagcagagatccgaggagtatcaatttgtgttcgaagaccaaattgagttcattcaggaa
tcaatgatggaaggtgttaatgttgatcaagagcttccaattgagtcgatacaaaaatca
gctctcgaaaaacttcaggaggataggaagagtctaccgatttattcctatagggaggat
ctgctccaagctataaatgatcatcaggttcttgttattgttggggaaacgggctccggg
aagaccactcaaataccacagtatctacacgaggcgggatataccaaacgtgggaagatt
ggatgtactcaaccacgtcgagttgcagctatgagtgttgctgcacgcgtttctcatgaa
atgggaatcaaacttggcaatgaggttggatactctatacgtttcgaggactgcacatct
gaaaaaacgactctgaaatatatgaccgatgggatgttgctacgagaatttcttggtgag
cctgatctagctagctatagtgtcattatgattgacgaggctcatgaaaggacgctttcc
actgacattttgtttggcttagttaaggatgtagcccgatttcgacctgatctgaagttg
cttatatcaagtgctactctagatgcagagaagttcagtgattattttgattgtgctccg
atttttaaaattcctggaaggcggttttcagttgagatacactatacgaaagctccagag
gcggattacatggatgcagcagtagtgactgctcttcaaatccatgtaactcaaccacct
ggtgatatattaatctttttgacagggcaggaggagattgaagctgcggaggagatcatt
aagcaccggataaggggtctaggttcaaaaatcgctgagctgatcatttgcccgatatat
gcaaacctgccaacagaattacaagccaagatatttgagcctactcctgaaggggctcgt
aaagttgtccttgctacaaatattgctgaaacatcattgacaatcgatgggattaaatat
gtcattgatccaggatttgctaagatgaagtcttacaaccctcgaacgggtatggagtca
ttacaagtcactcctatatctaaggcctctgccaaccaacgagctggtcggtctggtaga
acaggtcctggaaaatgctttcgattatacactgcacataactacatgaatgatttggct
gacaacacagtcccggaaatacaaagaaccaaccttgcaaatgttgtgttgtctctcaag
agccatgggattgtcgaattattgaattttgacttcatggaccctccaccatcagaagct
ttacttaaagcactcgaacttctctttgccctcggtgcccttaataagcttggagagtta
acaacaatcggtagaagaatggcagagtttcctctagatcccatgctgtccaagacgatc
gttacctctgacaaatacaagtgttcagatgaaattataagtattgctgcaatgctttct
gtggaaaattcaatcttttataggccaaaggacaaacaagtccacgctgacaatgcacgt
ttgaattttcatacaggcaacgtggaagatcatatcgcgctgttaaaggtttataattcc
tggaaggagacaaacttctcaacacagtggtgctacgacaattacatccaggtccgaagc
atgaagagagctagggatatccgagatcaattggaaggcctgctggagagagtagaaatt
aagttaacttcaaatgttaatgacttagaagctataaagaagtctataacatcaggattt
ttcccacacacagcgagactacaaaaggctggatcttatcgaactgttaaacatcctcaa
acagttaacattcaccccagctcaggcttatcacacgagcttcctagatgggttgtgtac
catgagctggtcttgacgagtaaggagtatatgcgacaggttactgaactgaaaccagaa
tggcttgtagaaatagctcctcactactatcagttgaaagatgttgaagactctagctca
aagaaaatgcctcgcggaattggacgtgcaccttag
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