Solanum pennellii: 107031260
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Entry
107031260 CDS
T04130
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
spen
Solanum pennellii
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spen03016
]
107031260
Enzymes [BR:
spen01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
107031260
Transfer RNA biogenesis [BR:
spen03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
107031260
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
CSD_RNase_II
Motif
Other DBs
NCBI-GeneID:
107031260
NCBI-ProteinID:
XP_015088049
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Position
9:complement(4362845..4372770)
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AA seq
793 aa
AA seq
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MAVRAMNSCVIFRSAATPTLAVSRRCRCVRQLTASSRQRNRSNSHSFLRCVPYPLSHVTV
RNYSVQNLVEMVMEELASIHKRGRVRATSKLESVSTGELLEDKLKKGTLQKGLLLEFKKD
SERLLLAVALKPDGKKNWMVSDQNGITASIKPQQVTFIVPGAENFEPTEISEFVQKAHDN
LDPALLEFAWNELLEKNESVTVQELAEMIFGSAEPLETYCAHLLLSRDEVYFAVLESKGF
SVYGPRTANQVDELLRRKLAKEASEKEFEELIQFLRSAKQMPYQDKPPRSSWKAEEKTWH
KIQSLEAFAIDSCKNDDQKKTAGMILKAMGQAKTSSAAVNLLIDIGYFPVHVNLDLLKLN
LPTDHRDEIISAAESLLSTSTDLDEADRIDLTSLKVYAIDVDEADELDDALSATRLQDGR
IKLWIHIADPTSLVQPGSIIDKDARRRGTSIFLPTATYPMFPERLAMEGMSLQQGRLCNA
VSVSVVLRSDGSIAEYSVENSIIKPTYMLTYESATELLHLNLEEEIELKILSEAAALRLR
WRREQGAIDTATIETRIKVTNPDHPEPSIKLYVENQADAAMRLVSEMMILCGEVIATFGS
HNNIPLPYRGQPQSNIDASAFAHLPEGPVRSAAIVRTMRAAEMDFRNPIRHGVLGLPGYV
QFTSPIRRYMDLAAHYQVKAFLSGDPLPLSAGELEGIASSVNMTTRVVRRLSSSSLRYWI
LEYLRRQPKGKRYRALVLRFIKDRIAAILLTEIGIQASSWVSIGVQIGDEVDVQVEEAHP
RDDILSLKEVEAV
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcgcgccatgaacagctgcgtaattttccgttccgccgcaacgccgacgctc
gccgtctcccgccggtgccgctgtgtccgtcaattaacagcttcttctcgacaaagaaac
cgttcgaattcacattcatttctccgttgtgtgccttatcctctcagccatgtcaccgtt
cggaactattcagttcaaaacctcgtcgaaatggttatggaagagcttgcttcgatacac
aaacgtggcagagttcgtgctactagcaagctggaatcagtaagcacaggagagctgctt
gaggacaagttgaagaaagggacactacaaaaaggattgttgctggagttcaagaaggat
tctgaaaggttgttgctagcagttgctcttaaacctgatggaaaaaagaattggatggtc
tctgatcagaatgggattacagcctctattaagccacagcaagtgacttttattgttcct
ggtgcagaaaattttgagcccacagaaatatcagaatttgtacagaaagctcatgataac
ttggatccagcactgcttgaatttgcatggaatgagctacttgagaaaaatgaatcagta
acagttcaagaactagctgagatgatttttggtagtgcggagcctcttgagacctattgc
gcccacctgctgttatcaagagatgaggtgtactttgcagttctggagtcaaaaggtttt
tctgtatatggacctcggactgctaaccaggtggatgaacttttgcgaaggaagcttgct
aaagaggcctcagagaaggagtttgaggaacttatacagtttctacgatctgctaaacaa
atgccttatcaagacaaacccccaagatcttcttggaaggctgaagagaaaacatggcac
aagatacagtctcttgaagcttttgccattgattcttgcaaaaatgacgatcaaaagaaa
acagctgggatgattttgaaagccatgggacaggcaaagacttcatctgcagcagtgaat
ctcctcatagatattgggtattttcctgtacatgtaaatctcgatttgttaaagttgaac
ctccctactgatcatcgggatgagattatatcggccgcagagagtcttttgtctacatcg
actgaccttgatgaggctgatagaatagacctgacttccctgaaggtttacgcgattgat
gttgatgaggctgatgagcttgatgatgcattgagtgcaacaaggttgcaggacggccgg
attaaactttggatacatattgcagatcctactagtttagttcagccaggaagcataata
gacaaggatgcaagaagaagaggaacttcaatattcttgcctactgcaacatatccaatg
ttccctgagaggttggctatggaaggcatgagtctgcagcaaggaaggttgtgtaatgct
gtttctgtgtctgttgtgctgcgttctgatggcagcattgcagaatactcggtggaaaac
tcaatcatcaaaccgacatatatgttgacatatgagagtgctacggagctccttcatttg
aatcttgaagaagagattgaactgaaaattctttctgaagcagctgcactccggttaaga
tggcgtcgagaacagggtgctatagacacagccaccatcgaaacccgaattaaggtgact
aatccagatcatccagagccgtcaatcaagctgtatgttgaaaaccaggctgatgcagct
atgaggcttgtttctgagatgatgattctctgtggggaagttatagccacttttggttct
cataacaacatccctttaccataccgtggacagcctcaatctaatatcgacgcttctgca
tttgcacaccttccagaaggacccgttaggagtgctgctattgttcgaactatgcgtgca
gctgaaatggatttcaggaatcctatacgccatggggtgttgggacttccaggctatgtt
cagtttacctcccctattagaagatatatggatctcgcagcccattatcaggtaaaggcc
tttcttagtggtgatcctcttcctctctcagctggggagctagaaggcattgcgtcttca
gtaaacatgacaaccagagttgtaaggaggctctccagcagcagtcttcgttattggata
ttggaatacttgagaaggcagccgaaagggaaacggtatcgtgccctggtccttagattc
atcaaagaccgaatagcagcaatactgttgacggagattggaattcaagcttcttcgtgg
gtgtctattggtgtacaaattggtgatgaagtagatgtccaagttgaagaagctcatcca
cgtgatgatattctctctcttaaggaggttgaggctgtatag
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