Solanum pennellii: 107031362
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Entry
107031362 CDS
T04130
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
spen
Solanum pennellii
Pathway
spen03018
RNA degradation
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107031362
09123 Folding, sorting and degradation
03018 RNA degradation
107031362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spen03019
]
107031362
03041 Spliceosome [BR:
spen03041
]
107031362
Messenger RNA biogenesis [BR:
spen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107031362
mRNA degradation factors
5'-3' decay
Lsm complex
107031362
Spliceosome [BR:
spen03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107031362
Complex C
U2 snRNP components
107031362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
LSM14
Motif
Other DBs
NCBI-GeneID:
107031362
NCBI-ProteinID:
XP_015088181
LinkDB
All DBs
Position
9:complement(77004831..77010080)
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDEDKYPHMRSVKNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttctcatacttcaaggatctggtgggcagggaagtgactgttgaactgaag
aacgatttggctattcgaggaacactacattcagttgatcagtatctcaacattaagctt
gaaaacactagggttgttgatgaggacaagtatccgcacatgaggtccgtgaagaactgc
ttcatcagaggatcggtggtcaggtatgtgcagttacctcctgatggagttgacattgaa
ctgcttcatgatgctacgaggagagaagctcggggtggctga
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