Solanum pennellii: 107031392
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Entry
107031392 CDS
T04130
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
spen
Solanum pennellii
Pathway
spen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107031392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spen03041
]
107031392
03009 Ribosome biogenesis [BR:
spen03009
]
107031392
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107031392
Spliceosome [BR:
spen03041
]
Complex A
U1 snRNP components
U1 related factors
107031392
Complex B
107031392
Ribosome biogenesis [BR:
spen03009
]
Eukaryotic type
Pre-60S particles
Helicases
107031392
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
AAA_22
DUF4761
CREG_beta-barrel
Motif
Other DBs
NCBI-GeneID:
107031392
NCBI-ProteinID:
XP_015088224
UniProt:
A0ABM1HNU3
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All DBs
Position
9:15405909..15424624
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AA seq
558 aa
AA seq
DB search
MSYVPPHLRNSAAGKTTTTPTINSIGADHFSSKHTSRISSLEKSSNGYSSSARRSSLNYS
LPNTFAVPDPIFPHWKPSERVLRLKSEQIEEIRLRLNVDVNVSPVSCPAPSPIESFPDMC
LHASIMKDIEKHGYTAPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFSIPMIQHCLAQQ
PLQRGDGPLALVLAPTRELAQQIEKEVTAFSMSLDSCKTAIVVGGTNISEQRSELRAGVH
IVVATPGRLIDHLQQGNTSLGRIAFVVLDEADRMLDMGFEPQIREVMRNLPAKHQTLLFS
ATMPAEIEALAQDYLTNPVRIKVGKVSSPTANVSQTLEKVPENDKIDRLLDLLVEEAAQA
EKSGHPFPLTIVFVERKTKCDEVAEALTQQGLLATALHGGRSQNEREAALRDFRHGPINI
LVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGRATSFYTDRDMYLVA
QIRRAIADIGSGNDVTIAMGKTARRKEREAAAAEKEARSELSKLSLVGSTVNVEDKYRHM
IAPSMMKKEGAADDAWDD
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtacctcctcacctgagaaattctgctgccggaaaaaccactaccacccct
actataaacagtataggcgccgatcacttctcttccaaacacacatccagaatttcttct
ctcgaaaagtcttccaacggttactccagttcagctcgccggagttccctcaattactcc
ttgcccaacacttttgctgtccctgaccccatctttcctcactggaagccttccgaacgt
gttcttcgtcttaaatccgagcagatagaagagattcgactgcggcttaatgtagatgtc
aatgtttctccagtctcatgtcctgcaccctcacctattgagtcatttcctgatatgtgc
ttgcatgcaagtataatgaaggatattgaaaagcatggctacactgcaccgacttctatt
caggctcaagccatgcctgttgctcttagtggcagggatctcttggggtgtgcagaaact
ggtagtgggaagactgctgcattcagcatacctatgatacagcattgcctagctcaacaa
cctcttcaacgtggtgatggacctttggcattagtgttggcacctacaagagagcttgca
caacaaatagagaaagaggttacggctttcagcatgtctttggattcctgtaagaccgca
attgttgtaggtgggacaaacattagtgagcagaggtctgagcttcgagcaggagtacat
atagttgttgctactccgggaagacttatagatcatttacaacaaggaaatacttccctc
ggcaggattgcttttgtagttttggatgaggctgatagaatgcttgacatggggtttgaa
cctcagataagagaggtgatgcgaaatcttccggcaaaacatcaaacactgctcttcagt
gccaccatgccagcagaaattgaagcattggcacaggattacttgactaatcctgtgcga
ataaaagttggaaaagtaagcagcccgacagcaaatgtttcccagactttagagaaggta
cccgaaaatgataagattgatcgccttttggatttgctggttgaggaggctgctcaagct
gaaaaatctggccatcctttccctttgaccattgtatttgtggaacggaagacaaaatgt
gatgaagtagcagaagctttaacgcagcagggtttgcttgcaactgcacttcatggtggt
cgtagccaaaatgaaagagaggctgcccttcgtgatttcagacatggacctatcaatatc
ttggttgctactgatgttgcgtctagggggttggatgtcacaggagttgcacatgtaatt
aacctagatcttccaaagaccatggaagattatgtacaccggattggaaggactggtcgt
gcagggtcaacgggccgagctacttcattctacactgatcgtgatatgtatcttgtggct
caaatacgaagagcaatagctgatattggttctggcaatgatgtgaccattgctatggga
aagactgcaagaagaaaggagagagaagctgcagctgcggaaaaagaagcaaggagtgaa
ttgtctaaactctctttagtagggtccacggtaaatgtggaggataagtataggcacatg
attgccccatcgatgatgaaaaaggagggagctgcagatgacgcttgggatgactga
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