Solanum pennellii: 107031625
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Entry
107031625 CDS
T04130
Name
(RefSeq) DNA topoisomerase 3-beta isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
spen
Solanum pennellii
Pathway
spen03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107031625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spen03032
]
107031625
03400 DNA repair and recombination proteins [BR:
spen03400
]
107031625
Enzymes [BR:
spen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
107031625
DNA replication proteins [BR:
spen03032
]
Eukaryotic type
DNA Topoisomerases
107031625
DNA repair and recombination proteins [BR:
spen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
107031625
FA (Fanconi anemia) pathway
107031625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
DUF5795
Motif
Other DBs
NCBI-GeneID:
107031625
NCBI-ProteinID:
XP_015088543
LinkDB
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Position
9:83533971..83545189
Genome browser
AA seq
864 aa
AA seq
DB search
MAPKVLMVAEKPSIALSIASVLSGAQMSTRRGSTEVHEFNAMFLGSRAHYKVTSVIGHVF
SVDFPAAFQDWTTTNPSDLFQAPILKKETNPKAHICRHLSQEARGCTHLVLWLDCDREGE
NICFEVIECTGFHTSDGRRIYRARFSSVTEKDILKAMNSLAEPNRDEALSVDARQEIDLK
VGVAFTRFQTSYFNGKYGNLDARVISYGPCQTPTLGFCVDRYLQIIMFKPEKFWMLHPYI
MYKGYELKLEWERSRLFDADVSAMFRNRIIEDRIMKVVRVSEKLESKARPSGLNTINLLK
VASSALGFGPQLTMQLAERLYTQGFISYPRTESTAYPSSFDFKGTLGALVHNPVFGAYVQ
KLLTDSYIKPRAGTDAGDHPPITPMRSASEDSLGNDAWKLYQYICQHFLGTLSPDCKYRR
IKVEFESGGEQFQCVGQLATVKGFTSIMPWLAISEKNLPEFAVGEKIEISKVELDEGNTS
PPGYLSESELISLMEKHGIGTDASISVHINNICERNYVQVQAGRRLAPTPLGISLIRGYQ
CIDSDLCLPDIRSFIEHQITLVAKGQADHSMVVQHVLEQFRRKFSYFVKQIDNMDALFEA
QFSPLSDSGRLLSKCGKCLRYMKYISTQPARLYCGTCEEVYYVPQKGTVKLYKELTCPLD
NFELLLCSMPGPEGKSFPLCPYCYNCPPFEGIDTFFGAPKTGDSTKLGKGVGMPCFLCPH
TTCPHSVIAQGVCACPECSGTLVLDLVSAPKWRLYCNMCNCLVSLPEGAHRISTTQEKCP
ECDSTIIEVDFNKKTTPLKDGATLHKGCILCDELLHSLVEMKHGRSFSRHGRRGRGRGRG
RGGYRGRGRGSNKQQDPKMSFRDF
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggctccaaaagttctcatggtagcagagaagcctagcattgctttatcgattgcctca
gtactatctggtgctcaaatgtcaacacgaagaggtagtacagaagtccatgagttcaat
gcgatgtttcttggatcacgtgcacattataaagtgacttcagtgattggtcatgttttc
agcgtagattttccagcagcttttcaagattggacaactacaaatccttcagatcttttc
caggcaccgatacttaagaaggaaacaaaccccaaggctcatatttgtaggcatctaagc
caggaagctcgtggttgtacacatttggtgttatggttggactgtgatcgtgaaggagaa
aatatatgctttgaagttatagagtgcactggatttcacacaagcgatggtagaagaatt
taccgtgctcgattctcttctgttactgaaaaagatattctgaaggcaatgaatagccta
gctgaacccaacagagatgaggcattgtctgtagatgcacgccaagagattgatttgaaa
gttggagttgcatttacacgtttccagactagttatttcaatgggaaatatggcaatctt
gatgcaagggttatctcctatgggccatgtcaaactcctacgcttgggttctgtgtggat
cgttacctgcaaattattatgttcaagccagaaaagttttggatgctgcatccatacatt
atgtacaaggggtatgaactcaagttagaatgggaacgtagcaggttgtttgatgctgat
gtttctgcaatgtttcggaacagaataatagaggataggattatgaaagttgttcgtgta
tctgaaaaactggaatccaaagctcgtccttctggtctaaacacaataaatcttctgaag
gtagcttcaagtgcactgggctttggtccccagttaactatgcaattggctgagcgtctg
tatactcaaggttttatcagctatccacgtaccgaaagcacagcatatccttcttctttt
gacttcaaaggaacactaggggcgttggtgcataatcctgtatttggtgcttatgtgcaa
aagcttttaactgatagttatattaagccacgggcaggaactgatgcaggcgatcatcct
ccgataactccaatgcgttctgctagtgaggatagtttggggaatgatgcatggaagttg
taccagtacatctgccagcattttttgggaactctctctccagattgcaaatatagaagg
ataaaagttgaatttgaaagtggaggagagcaatttcagtgcgttgggcagcttgccacc
gtcaaaggattcacctctattatgccatggctggctattagtgagaagaatcttcctgag
tttgctgtaggagagaaaattgagatttctaaagttgaactagatgaggggaacacttcg
cctccaggttatctcagcgaaagtgagctgatctctttgatggaaaaacatggtattgga
acagatgcgtcaatctctgtgcatattaacaacatatgcgaacgcaattatgtccaggta
caagctgggcggcgattggctccaactcccctgggtatcagcttgataagagggtatcaa
tgcatagattctgatctctgtttgcctgacatacgaagtttcattgagcaccagatcact
ttggtagctaaaggtcaagcagatcattcaatggttgtgcagcatgtactagaacaattc
agaaggaagttcagttattttgttaagcagattgataacatggatgcattatttgaagcc
caattttctccactttccgactctggacgtctcctcagtaaatgtggcaaatgcttgcga
tatatgaaatacatatcgactcaaccagctcgactgtactgtggtacctgtgaggaagtc
tattatgtacctcagaagggtacagtcaagctatacaaggagcttacttgcccccttgat
aatttcgagctgttactatgtagcatgcctggtcccgaaggcaagtcgttccctctctgt
ccttattgctacaactgtcccccgtttgaaggcatagatacattttttggcgctcctaaa
actggtgattcaaccaagttgggaaagggagtcggaatgccttgcttcctctgtcctcac
accacatgtccacattctgtgatcgcacaaggcgtttgtgcctgcccagaatgcagtggt
acacttgttcttgatcttgtcagcgctccaaaatggaggctctactgcaacatgtgcaat
tgtcttgtatccttgcccgaaggagctcatcggatttctacaactcaagagaagtgtcct
gaatgtgattccactatcatagaagtcgatttcaacaagaaaacaacgcccttaaaagat
ggagctacactccataagggttgtattctttgcgacgagctgctgcattcacttgtggaa
atgaaacatggaagatcgttttctaggcatggcaggagaggacgaggtagaggaagaggt
agaggaggttatcgcggaagaggacggggcagcaacaaacaacaagacccaaaaatgagt
ttccgagatttctaa
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