Solanum pennellii: 107031691
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Entry
107031691 CDS
T04130
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
spen
Solanum pennellii
Pathway
spen04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
spen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107031691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
spen04121
]
107031691
Enzymes [BR:
spen01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
107031691
Ubiquitin system [BR:
spen04121
]
Ubiquitin ligases (E3)
HECT type E3
107031691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
107031691
NCBI-ProteinID:
XP_015088624
LinkDB
All DBs
Position
9:946704..957661
Genome browser
AA seq
1552 aa
AA seq
DB search
MGNRGQKRTENVDELPADKRPCSSTNNRPSTSNSVIPTTMSSIHESHHGDIDTSSSSSST
SGSSEGEKDSAYGSYESDSTYRDYYRRQLMGNQSKFNGVLESLRKESEESALLAALTELC
DLLSFSPDSSMSNVMADLFSPVLVRLARYESNSEIMLLAIRAMTYLCEVHPRSSASLANH
DAVPALCQRLMAIEFLDVAEQCLQALEKISREQPIVCLQSGAIMAILRYIDFFSTSEQRK
ALLTIVNICKKLPSGCPPPLMEAVPVLCDLLLYEDRQLVESVATCLIRIVEQASHSSEML
DELCNHRLVQQVTSLIELNGRTTVSQSVYVGLIGLLFKLAAGSIVAVKTLFERNISHILK
DILSTHDFSHGVPSTLIVNGHYNQVDEVLKLLNELLPPISREQNIKLAADKEDFLINNPD
LLEEFGFHLLPVLIQVVNSGMSLNAWFGCLSVINKLVYFSKSDRLEFLQNTNISSFLAGV
FTRRDPHVLILALQIVDKLLEKLSHIFLDSFVKEGVLFAVDALLSPQKCSQSLFSTNGVQ
ASDETGQGSAPPTAVNCLCFASDALKSPTGPESRTCKIEKETVQSLARHIKTNYFATDSM
NSRLGITDVLQKLKTLSSQLTDLVHKFSSSIAPPQEKEDFYPVLHQIMSELNGNNAISTF
EFIESGVVKSLVNYLSNGQYLGKKVDGDVSVNQLYIIEKRFELFGRLLLDNSGPLVENST
FLALIRRLHSALCSVENFPVILSHASKLRNSYATIPYEHCTPYPCLKVQFVKGEGESSLV
DYPESVVSVDPFSLLETIEGYLWPKVSKKKSQKLNPPTLDLEEESPSRASQDVSMSQGKN
PGPMDSDTTSTDSHETQVVKNNLQLFAEVETVDVEQTKSVPMDISDVNAESLKKGRLNSS
EVDSSTSLECTGCCDDENVAPKLIFYLEGQKWNHKLTLYQTLLLQQIKAENDITTNSSMW
SQVHRVTYRRFVRHKPGCPQSCKHAVHSTSSENTAWWQYTPSFSSMFGSEMVDLEKSSPT
YDILFLLRSLEGLNRFSIHLGSRTKLYAFAEGKTTNFGDLKVTNSDLPQNEFASTKLTEK
IELQMRSPFSVSIGGLPPWCEQLVNTCPFLFGFEARCKYFRLAAFGRQPIQPESSSHNTA
TGVSGRHQNSSVLRRKKFLVHRSRILDSARQMMDLHANQKVVIEVEYNDEVGTGLGPTLE
FFTLVSHEFQKIGLGMWRGDYLAHASMSVEEESGIIFSPFGLFPRPWSPSPHSLNGLEFS
EVLKKFVLLGQIVAKSLQDGRVLDLRLSRAFYKLLLGKELTLYDIQSFDPELGGVLLEFQ
ALVERKRHLESHPEGKSSLDLELNFRNTKIGDLCLDYTLPGYPDYVLSSASDAKTVDSSN
LEEYVLLVVDATLNSGISRQIGAFKSGFDQVFPIRHLQVFTEDELERLLCGECGFWNSNE
LLDHIKFDHGYTANSPPVLNLLEIMKEFDSKQQRAFLQFVTGAPRLPPGGLASLSPKLTI
VRKSCSVWVDADLPSVMTCANYLKLPPYSSKEKMKEKLLYAIMEGQGSFHLS
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaccgggggcagaaaaggactgaaaatgttgatgaactgcctgccgataagcga
ccctgtagctcaaccaataacaggcctagtacttccaactcagtgattcctactacaatg
agttccatacacgaaagtcaccatggtgatatagacacatcatcatcatcatcatccact
tcagggtcaagtgaaggtgaaaaggactctgcttatggatcttatgaatctgatagtact
tatagggactattacaggcggcaattgatgggcaatcagagcaaattcaatggagttttg
gaaagtttgagaaaagaatctgaagaatcagcactgttggctgctcttacggaactatgt
gatttgttatcgttttctcctgatagttcaatgtcgaacgtaatggcagatttattttct
cccgttcttgttagattggctagatatgagagcaattctgaaataatgctattagcaatc
agggcaatgacttatttatgtgaagttcatcctcgttcttcggcctcccttgccaatcat
gacgcagttcctgccctttgccaaagactaatggccattgagtttttggatgtggctgaa
cagtgtttgcaagcactagagaaaatctcgcgggagcaacctatagtgtgtttgcagtct
ggggctataatggccattttacgttacattgatttcttttcgacaagtgagcagaggaag
gcactcttaacaatcgtaaatatttgtaaaaagcttccctccggatgtcctccaccttta
atggaggcggttcccgttttgtgcgatcttcttttatatgaggatagacagcttgttgag
agcgtagcaacttgtttgattagaatagttgagcaggcatcccattcttcagagatgctg
gacgaactgtgtaatcacaggctagttcagcaagtcacaagtctcatagagttgaatgga
agaacaacagttagccaatcagtttatgttggtttaattgggttacttttcaaactggct
gctggctctattgttgctgtcaagactctctttgaacgtaacatcagccacatattaaag
gacattttatccactcatgacttctcacatggggtgccttctactctgattgttaatggg
cattataatcaggttgatgaagttctcaagttgttaaatgaacttcttcctcccatatcc
agagagcagaatatcaaactagcagcagacaaggaagatttcctcatcaacaatccggat
cttctagaggaatttggatttcatttacttcctgtgctgatccaggtggtcaattctggc
atgagtttaaatgcatggtttggctgtctctctgtcatcaataagttggtttatttcagc
aaatctgacaggcttgaatttcttcaaaatactaacatttcaagcttcttagcaggagtt
tttactcgcagagatcctcatgttctgatattagcccttcaaattgttgataagctatta
gagaagctctctcatattttcttggactcatttgttaaggaaggtgttctttttgctgtt
gatgcacttctttccccgcaaaagtgttcgcagtctctgttttcaaccaatggtgttcaa
gcatcagatgaaaccggccaaggatcagcaccacctactgcagtaaattgtctttgtttt
gcttctgatgctcttaagtctccaacaggaccagaatcaaggacttgcaagatagagaaa
gagactgtccaaagtcttgctaggcatatcaagaccaattactttgcaacagactcaatg
aactccagattaggaataaccgatgttcttcagaagctcaagactctttcgtctcagtta
actgatctggttcacaaatttagtagcagcattgctcctcctcaagagaaagaagacttt
taccctgttttgcatcaaattatgtcagagttaaatggaaataatgccatttctacgttc
gagttcattgagagtggagttgtgaagtctctagtaaattacctctccaatggccaatac
ttgggaaaaaaggtagatggtgatgtctcagtaaatcagctgtatattatagaaaagaga
tttgagctgtttggtagattacttttggataactctggcccgcttgtggagaactccact
tttctagctttgataaggagattgcatagtgcactttgctctgttgaaaacttcccagtc
atcttgagtcatgcatctaagctacgaaactcatatgctacaatcccatatgagcattgt
acgccatatccttgtctgaaggtccagtttgtgaagggagagggggagtcatcacttgtt
gattatccggagagtgttgtgagcgtagatcccttttcgctgttggaaacaattgaggga
tacctgtggccaaaagtgagtaaaaagaaaagtcaaaagttgaatccacccactctggat
ttggaggaagagtcaccatctcgtgcatcacaagatgtaagcatgtctcaaggtaaaaat
ccaggacccatggattcggacaccacttccacagattctcatgaaacgcaggttgtgaag
aataacttgcaattatttgctgaagtggaaactgtggatgtagaacaaacaaagagtgtc
ccaatggatatttcagatgttaatgcagagtctttgaagaaaggaagactgaattcatct
gaagttgatagtagtacaagtttggaatgtactggatgttgtgatgatgaaaatgttgca
cctaaattgatattctacctggagggacagaagtggaaccacaagttgaccctatatcaa
actctactcctgcagcagattaaagcagagaatgacatcactacaaattcaagcatgtgg
agtcaagtacacagggtgacctacagaagatttgtgaggcataaaccaggatgtcctcag
agttgcaaacatgctgtacattctacgtcatctgagaatacagcatggtggcagtacacc
ccatctttctctagcatgttcggttctgaaatggttgatcttgagaaatcaagtccaact
tatgatatcttatttctacttagaagcttggaaggtttgaacaggttcagtattcatctt
gggtctcgaacaaaactatatgcttttgctgaaggaaagactaccaattttggtgatctt
aaagttacaaattctgatctccctcagaatgaatttgcaagcactaaattgacagaaaaa
atagaactgcaaatgaggagtcccttttctgtttccataggtggtttgccaccttggtgt
gaacaattggttaatacatgcccctttttgtttggtttcgaagcaagatgcaagtatttc
cgccttgctgcatttggtcgacagccaattcagcctgaatcatcgtctcataatacagct
acaggtgtgagtggtaggcaccaaaacagtagtgttttacgccggaaaaaattcttagtt
catcgaagtagaattttggattctgctaggcagatgatggacctccatgccaatcagaag
gttgtcattgaggtggaatataatgatgaggttggtactggtcttggtccgacgctagaa
tttttcacccttgtcagtcatgagttccagaagattgggctagggatgtggagaggtgat
tacttggctcatgccagcatgagtgtagaggaggaatctggaattattttctctcctttt
ggtctgttcccccgcccatggtcaccttcgccccattcattaaatggcctagagttctct
gaagtgctgaaaaagtttgtgcttctgggccagatagttgcaaagtctcttcaagatggc
agggttctagatcttcggttatccagagcattttacaagcttcttcttgggaaggaactc
actttgtatgacatccagtcatttgaccctgaacttggtggagttcttctagaatttcag
gctcttgttgaaagaaaaagacatctggaatcacatcctgagggaaaatcatcgttagac
ctagaacttaatttccggaatacaaaaattggtgatctttgtcttgactatactcttcct
ggctatccagattatgtccttagttctgcatctgatgcaaaaacggttgactcctctaac
ttagaggaatatgttttacttgttgtggatgctactctgaattctggaatttcaagacaa
attggagcattcaagtccggctttgatcaggttttccccatcagacatcttcaggttttc
actgaagatgaattagagagactattgtgcggagagtgtggattctggaactccaatgag
cttctggatcacatcaagtttgaccatgggtacactgccaacagtcctccagttttaaat
ttacttgaaattatgaaggaatttgacagcaagcaacagagagcattcctgcagtttgtc
actggtgcacctagactgcctccagggggtctggcatctctaagcccaaagttaacaatc
gttcggaagagttgcagtgtttgggtcgacgctgacctacctagtgtgatgacatgtgca
aactatctcaagctaccaccttactcttcaaaagagaaaatgaaggaaaagctgttatat
gccataatggaaggacaaggctcattccatctttcatag
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integrated database retrieval system
