Thiospirochaeta perfilievii: EW093_10275
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Entry
EW093_10275 CDS
T06210
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sper
Thiospirochaeta perfilievii
Pathway
sper03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sper00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EW093_10275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sper03019
]
EW093_10275
03400 DNA repair and recombination proteins [BR:
sper03400
]
EW093_10275
Enzymes [BR:
sper01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EW093_10275
Messenger RNA biogenesis [BR:
sper03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EW093_10275
DNA repair and recombination proteins [BR:
sper03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EW093_10275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
DnaD_N
Motif
Other DBs
NCBI-ProteinID:
QEN05079
UniProt:
A0A5C1QDM3
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All DBs
Position
2239728..2241638
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AA seq
636 aa
AA seq
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MDIKSVLKDKFGFDNFRDGQEEVVERVLDGRSVAAIFPTGAGKSLCYQLPATQFKGLTLV
VSPLISLMHDQLKFLQKNGIPSAVLDSTLTRDQYQETLNKAINNSIKVLMISVERFKNER
FRNYLFRMDISLLVVDEAHCISEWGHNFRPEYLKLPKYVAEFNIPQVLLLTATATENVAI
DMCKKLNIKKENLVRTGFYRSNLHLEVTPVDSDKKNELLLNRLAEENVPTIVYVTLQKSA
DSVASYLQERGVLALSYHAGLKSEERTQIQNDFMDGHVNCIVATIAFGMGIDKSDIRRVI
HYDLPKSIENYSQEIGRAGRDGRDSVCEVFANRSGITVLENFIYGDTPGLDSIKQLLEDI
QSSNDIWEVKILSLSNKVNIRALPLKTLIVYLEIRGIITSSYSYFSQYRFKTEKTSSEIF
SNFDNNRQNYLKSLFSYSNKKRTWIDLRLEDFLIETNGDRSKAINALEYLDSKGFIQLES
KQAVEVYKIIDNSYSVENLSLELFNLFKKKESSEILRVNKMIEFFESKTCLSSRLSSYFA
EDRGVTKCGHCSVCCGRVAVMGKAESLETLTSDMVQKSSAEILSNIGDKGSSQIVANFLC
GISMPLFTKIKARSMYGFSSLEKYPYKDVLGIITNK
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggatataaaaagtgttttaaaagataagtttggttttgacaattttagggatggtcaa
gaagaggttgtagagagggttttagatggtagatctgtagccgctatttttcctacagga
gctggaaagtccctatgttaccaactacctgccacacaatttaaaggcctaacgctagtt
gtatcacctcttatttctttaatgcatgatcaactaaaatttctacagaaaaatggaatc
ccatcagcagtattagattctaccctaactagagaccagtatcaggagacacttaataaa
gctataaataatagcattaaggtattaatgatatccgttgaaaggtttaaaaatgagaga
tttagaaactacttatttagaatggatatctctctattagtagtagatgaggcccactgt
atatctgaatggggacacaattttagaccagagtatctaaaactacctaagtatgtagct
gagtttaatattccacaggtactacttcttactgcaactgctacagaaaatgtagccatt
gatatgtgtaaaaaacttaatattaagaaagaaaacctagttagaacaggtttttataga
tcaaatcttcatttagaggtaacaccagttgatagtgataaaaaaaatgaactgcttctt
aatagattagctgaagagaacgtaccaacaattgtatatgttacccttcaaaaaagtgcg
gattctgtagctagttacttacaagagaggggtgttttagcactatcatatcacgctgga
ttaaaaagtgaagaacgaacccaaattcagaacgattttatggatggacatgtaaactgt
atagttgccactatagcctttggaatgggtattgataaaagcgatattagacgggttata
cactatgacctgccaaaatccatagagaattatagccaagagattggacgggctggaaga
gatggtagggattctgtttgtgaggtatttgcaaatagaagtggaattacagtgttagag
aactttatatatggtgatacacctggtttagactctataaaacaactattagaggatatt
caatcgtcaaatgatatatgggaggtaaaaatattgtccctgtcaaataaggtcaatata
agagcccttcctctaaaaactctcattgtctacttagagattagggggattattacttca
tcatatagctacttttcccagtaccgttttaaaacagaaaaaaccagtagtgagattttt
agtaattttgataacaatagacagaactatttaaagtccctatttagctatagtaataaa
aaaagaacttggatagatttaaggttagaagacttccttatagaaaccaatggggatcgg
tctaaggctataaatgcccttgagtatttggattctaagggctttattcaactagaatct
aagcaggctgtagaggtctataaaataattgacaactcatatagtgttgaaaatcttagc
ttagagttatttaatctctttaaaaagaaggagagtagtgaaattttaagggttaataag
atgatagagttttttgagtcaaagacatgtctatcatctagactctctagctactttgca
gaggataggggagtaaccaagtgtggacattgctcggtttgttgtggcagagttgctgta
atgggtaaggcagagagtttggagacattaacatctgatatggttcagaagagtagtgcc
gagattctttcaaatattggggataagggtagtagtcaaatagtagcaaactttttatgt
gggatttctatgccactatttactaaaattaaagctagatcaatgtatggtttttcaagt
ttagagaagtatccatataaggacgttctaggaattattacaaataaataa
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