Thiospirochaeta perfilievii: EW093_10665
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Entry
EW093_10665 CDS
T06210
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sper
Thiospirochaeta perfilievii
Pathway
sper03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sper00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EW093_10665 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sper03021
]
EW093_10665 (rpoC)
03400 DNA repair and recombination proteins [BR:
sper03400
]
EW093_10665 (rpoC)
Enzymes [BR:
sper01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EW093_10665 (rpoC)
Transcription machinery [BR:
sper03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EW093_10665 (rpoC)
DNA repair and recombination proteins [BR:
sper03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EW093_10665 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QEN06379
UniProt:
A0A5C1QH19
LinkDB
All DBs
Position
2345390..2349592
Genome browser
AA seq
1400 aa
AA seq
DB search
MNEQQDFDHIMLKLASPEQIRAWSYGEVKKPETINYRTLRPEKEGLFCERIFGTTKEWEC
YCGKFKSIRYKGVVCDRCGVEVTHFKVRRERMGHIELACPVSHIWYYRSVPSRMGLLLDL
SIAALRSVLYYEKYIVIEPADTDLKKHQLLTEEEYAEAKDRYGVTFTAGMGGEAVSSILE
NLDLDALSSELRAKMADKGAKSDKRLLKRIEIVENFRDSGNRCEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLMSLHAPDIIIRNEKRMLQEAVDALFDNSK
KKKVVKGASNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKLHQCGLPAK
MALELFKPFIMKKLVERDIVYNIKKAKSLVEHETPEVWAVLDEVVKEHPVLLNRAPTLHR
LGVQAFEPVLVEGKAIRLHPLVCHAFNADFDGDQMAVHVPLTRAAQIECWTLMLSDTNLM
SPANGQPVVYPSQDMVLGIYHLTSEKPKAKGTGKYLSSKDEAILAVQANSIEYQALINIL
IDGEWIKTTAGRIVFNDLLPEEVAFVNYRLGDDEIRDLITHTYEEHGAYVTVKMLDIIKD
TGYKYATIFGASIGVDDILIPECKKEMIDAANAEESKIINQYMQGHITSDERYNRVVEVW
STTNEKLTNEMMDNVEKDKDGFNNIYMMANSGARGSRNQIRQLSGMRGLMAKPSGDIIEL
PIRSNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVINEEDCGTI
NGIEMTALKDGEEVVEALSDRIQGRFTLERVKHPITDEIIIDVNEEITDKTARAIESVGV
ESVKVRTVLTCEAKQGVCRKCYGRDLSRNKNVNIGEAVGIVAAQSIGQPGTQLTMRTFHV
GGAASAITEDNKIALNYPVLIRSFVGQSVEIEDDKVLFTRKGEMTVAKILDTYKIEKADN
IIVEDGQKVIKGEIIIERKSGNVEADDIAFVVLHGDDLLLVAQDQVVEIRNGSTVIAKEN
QIVPAEEAIAFFDPFSDPIIAEFEGTTKYEDIIPGSTLREEVNEDTGKIEKKISDTAAET
LQPRILILDNNGKELATYFLPNNAYLSIDNNEKVIAGTTLAKLLKESAKTQDITGGLPRV
GELFEARRPREEAVLAKIGGVVRFKGIAKGKRLIAVEDPYGREFKHQILMGKHLVVRDGD
TVKAGEKLCEGNIDPHDVLDILGENALQRFLVDEVQEVYRMQGVQINDKHIGVIVRQMMR
KIEITEVGDTHFIYGQQIDKYSFRKENEKVVSQGGQPAVARPLLLGITRASLQIDSWISA
ASFQETTRVLTNAAIAGDIDELRGLKENVVIGHLIPAGTGMKRYAGPKLYNEEVEDLDQH
VQEIMNERAKAALEATEEEI
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaacaacaagattttgaccatataatgttaaagcttgcttcaccagagcagatc
agagcatggtcttatggtgaagttaaaaaaccagaaactattaactatagaactcttagg
ccagaaaaagagggtctcttttgtgagagaatctttggaacaactaaagagtgggagtgt
tactgtggtaaattcaaatctattagatacaaaggtgttgtatgtgatagatgtggagtt
gaggtaacccactttaaagttagacgtgaaagaatggggcatattgaattagcatgtcct
gtatctcacatttggtattatagatcagttccatcaagaatgggtcttcttttagatctc
tcaattgctgcgttaagaagcgttttgtactatgaaaagtatattgtaattgagccagct
gacacagacttaaaaaagcatcaactcttaacagaggaggagtatgctgaagctaaagat
agatatggtgttacttttactgctggtatgggtggagaagctgttagttccattttagaa
aacttagacttagatgcattgtcatctgaattaagagctaaaatggctgataaaggagct
aaatctgataagcgactacttaaaaggattgaaattgtagaaaactttagagactctgga
aatagatgtgagtggatgatactagatgttattccagtaattccaccagagttaagacct
atggttcaattagatggtggtagatttgcgacatctgacttaaatgatctttatagaaga
gttattaatagaaataacagacttaaaagattaatgtctcttcatgctcctgatattatt
attagaaatgaaaagaggatgttacaggaagctgtagatgctctatttgataactctaaa
aagaaaaaagttgttaaaggtgcttctaacagaccattaaaatctctttctgatatgtta
aaaggtaaacagggtcgttttagacaaaacttacttggtaagcgtgttgactactcaggt
cgatcggttattgttgttggtcctaatttaaaactacatcagtgtggtctacctgcaaaa
atggctttagagttatttaaaccatttattatgaaaaaacttgttgaaagagacatagta
tataatattaaaaaagcaaagagtttagtagagcatgaaactccagaagtttgggctgta
ttagatgaggttgtaaaagagcatccagtacttttaaaccgtgcaccaactctacataga
ttaggtgttcaagcttttgaacctgttttagttgaaggaaaagctattagacttcaccct
cttgtatgtcatgcatttaatgccgactttgatggtgaccagatggctgtccacgtacct
ttaactagagcagcacagatagagtgttggactttaatgttgtctgatacaaatctaatg
tcacctgcaaatggtcaaccagtagtttatccttcccaggatatggttcttggaatttat
catttaactagtgaaaaaccaaaggctaaaggaactggtaaatacttatcaagtaaagac
gaggctattttagcggtacaagcaaactcaatagagtatcaagctttaattaatatctta
attgatggagagtggataaaaactactgctgggcgaattgtatttaacgatcttttacca
gaagaggtagcatttgttaactataggcttggtgatgatgagattagagatttaattaca
cacacttatgaagaacatggagcttatgtaacagttaaaatgttagatatcattaaagat
acagggtataaatatgcaactatctttggtgcttctattggtgttgatgatattcttatt
ccagaatgtaaaaaagagatgattgatgccgcaaatgctgaagagagtaaaatcataaat
cagtatatgcagggacatattacatctgacgagagatataacagagttgttgaagtttgg
tctacgacaaatgagaagttaacaaacgagatgatggataatgttgaaaaagataaagat
ggatttaacaatatctatatgatggcaaactctggagccaggggatctagaaaccagatt
agacagttatcaggtatgcgtggtcttatggcaaaaccttcaggggatattattgagtta
cctattcgatcaaactttaaagagggtctttctgtaattgagttctttatctctacaaat
ggagccagaaagggtcttgcggatacagctttaaaaactgcggatgcgggatacttaaca
agaagacttgttgatatagctcaagatgttgttattaatgaggaagattgtggaactatt
aatggtattgagatgactgctcttaaagacggtgaagaagttgttgaggcattatcagat
agaatccagggtaggtttacacttgaaagagttaagcaccctattacagatgagattatt
attgatgtaaacgaagagataacagataaaactgcaagagctattgaatcagttggtgtt
gagtctgtaaaggttagaactgtattaacatgtgaagcaaaacagggtgtttgtagaaaa
tgttatggtcgagatctttcaagaaataagaatgttaacattggtgaagctgttggtatt
gttgctgctcagtcaattggtcagccaggaacacagttaacaatgagaactttccacgtt
ggtggtgctgcatctgcaataactgaagataataagatcgctttaaactacccagtatta
attagatcttttgttggtcaatctgtagaaatcgaagatgataaagtattgtttactcga
aagggtgaaatgacagtagctaaaatcttagatacatacaaaatagagaaagctgacaat
attatagtcgaagatgggcagaaagttattaaaggtgaaataatcattgaaagaaagtca
ggaaatgtagaagcagatgatattgcatttgttgtacttcacggtgatgaccttttactt
gtagctcaggatcaagttgttgaaataagaaatggttctacggtaatcgctaaagagaat
caaattgttccagcagaagaggctattgcattcttcgacccatttagtgatccaattatt
gcggagtttgaaggtactacaaagtatgaagatattatacctggttcaacacttcgagag
gaagttaatgaggatacaggtaaaatagagaagaaaatatctgatacagcagctgaaaca
ctgcagcctagaattcttatattggataataatggtaaagagttagcaacatacttcttg
cctaataacgcttatttaagtatagataacaatgaaaaggttatagcgggaacaactctt
gctaaactgttaaaagagtctgctaagacccaagatattactggtggtctaccaagggtt
ggagagctatttgaagcaagaagacctagagaagaggctgttttagctaaaatcggtggt
gttgttagatttaaaggaattgctaaaggtaagaggcttatagcagtagaagatccatac
ggtagagagtttaaacatcagatcttaatgggtaaacacttagttgttagagatggagat
actgttaaagctggtgagaaactttgtgaaggtaacattgatccccatgatgttttagat
atcctaggagaaaatgctctacagagattcttagttgacgaagtacaagaagtttatcga
atgcaaggtgttcagataaacgataagcatataggtgttattgttcggcagatgatgaga
aaaattgagattacagaagttggtgatactcactttatctacggtcagcagatcgataag
tatagctttagaaaagagaatgagaaagttgtatcccagggtggtcaacctgctgtagct
agacctctattattaggtattacaagagcttcattacagattgattcttggatttcagct
gcgtcattccaggaaacaactagagttttaacaaatgctgctattgccggtgatatagat
gagttacgtggacttaaagaaaacgtagttataggtcacttaataccagctggtacaggt
atgaaacgatatgctggaccaaaactgtataacgaagaagttgaggacttagatcaacac
gttcaagagattatgaatgagagagctaaggctgctttagaggctacagaagaagaaatt
taa
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