Thiospirochaeta perfilievii: EW093_14715
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Entry
EW093_14715 CDS
T06210
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sper
Thiospirochaeta perfilievii
Pathway
sper02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sper00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EW093_14715 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sper03021
]
EW093_14715 (rpoD)
Transcription machinery [BR:
sper03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EW093_14715 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4_2
TraI_middle
Motif
Other DBs
NCBI-ProteinID:
QEN05893
UniProt:
A0A5C1QCR0
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All DBs
Position
3156724..3158814
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AA seq
696 aa
AA seq
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MAQLDKNPAIIKLLEYGRKKRVLSYEEVNNMLPEDILNSDQIEDVLTLIEKNNILLEDDE
DGSVVVPVGHVLVPDLGEIDSDEKEDDSESDEIEDSEEDIDEDIDEEIDEEIDIEDPDFS
LEDDAEEEEEEELEEDDDDEPIIDPSALGFGSDGDSSDDETLGFKSSMELEEIDVTIDED
LEIEKISDNDIPKSVAKKLIVDEKDSVIDDPIRLYLREIGKESLLTAEQEVELSRSMEEG
ELIIKEILQGNGMIISEYIRLMEKASCKDDPRELDLSKKEVSEILAARRRLNALYREPLR
KVMPKLKKYMALKEKVTATEGDPLTDEKVLEFKESLVKELSLVELYQDEIIEFSDKYIVA
IRMINKLRREQYLLQRDLKVKSLREVRTLGRSLAQQSKKAQIEEELGYTADQLKDKIRTL
QTNYRDLRNIELEFENSADEILVMGDDISHGKVMMKTAKDRLIKANLRLVVSIAKKYTNR
GLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMI
EQINKVVRESRLLMQIKGREPSDEEIAERLGWNVQRVKSVKNVAREPISLETPIGEEEDS
LLGDFIEDKDVENPANQTAFKVLQEQLSEVLSTLPPREQEVLKMRFGLDDGYSLTLEEVG
LYFNVTRERIRQIEAKALRRLRHPNRSVKLKDYLEN
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcacaattggataagaatccggcaataattaagttgttagagtatggtagaaagaaa
agagttttgtcctatgaggaagtaaataatatgctccctgaggatattttaaactctgat
caaattgaagatgttttaactttgattgaaaaaaataatatattattggaagacgatgag
gatggctctgttgttgttcctgtcggtcatgtcttagttcctgatttaggagaaattgat
agtgacgagaaagaagatgattcagaaagtgatgaaattgaagactcagaagaagacatt
gatgaagatatagatgaagaaattgatgaagaaattgatattgaggatccggatttttca
ttagaggatgatgctgaagaggaagaagaagaagagcttgaggaagatgatgacgatgaa
ccaattattgatccttcagccctaggttttggctctgatggagactctagtgatgacgaa
acccttgggtttaaaagtagcatggagcttgaagagattgatgttactatagacgaagat
ttagagattgaaaaaatttctgataatgatattcctaaaagtgttgcaaaaaaactgatt
gttgatgagaaggactctgtaattgatgatcctataagactttaccttcgggaaattggt
aaagagagtctattaactgcggaacaagaagttgaactttctagaagtatggaagagggt
gagttaataataaaagagattcttcagggtaatgggatgattatatccgagtatattagg
ctaatggaaaaggcttcgtgtaaggatgatcctagggagcttgacttaagtaaaaaggaa
gtttctgaaatattagctgcaagaagaagattaaacgccctatatagagaacctttaaga
aaggtgatgccaaaacttaaaaaatatatggctcttaaagagaaggttacagcaactgaa
ggggatcctttaactgatgaaaaagttttagaatttaaagaatctttagttaaagagtta
agtcttgtagagttatatcaagatgagattatagagttttctgataagtatattgttgca
attagaatgataaataaacttagaagagagcagtatcttttacaaagggatcttaaagta
aaaagtttacgggaagtaagaactcttggtagaagtttagcccagcagagtaaaaaggca
caaatagaagaggaactaggttacactgctgatcagttaaaagataaaattagaactctg
caaactaattatagagatcttagaaatatagaattagagtttgagaatagtgcagatgaa
atcttagtaatgggtgatgatatttcccatggtaaggttatgatgaaaactgctaaggat
aggctaataaaagccaatttaagacttgtagtaagtattgcaaaaaaatatactaacaga
ggtttacacttttttgatttagttcaagagggaaatattggtttaattaaagctgtagag
aaatttgagtatagaaagggatataaattctcaacctatgcaacttggtggataaggcaa
gctattacgagatctatttcagaccaagctagaacgatacgtgtacctgttcatatgatt
gaacagataaataaagttgttcgagaatcaagacttcttatgcagataaaaggtcgtgag
ccaagtgatgaagagatcgctgagagattagggtggaatgttcaaagagtaaaatctgta
aagaatgtagctagagagcctatctccctagagactcctattggagaagaagaagactcc
ttattaggtgactttattgaggataaagatgttgaaaatcctgctaatcaaacagcattt
aaggttttacaagaacagttatctgaggtattatcaacattgcctcctagagagcaggaa
gtgttgaagatgaggtttggtttggatgatggttattcgttaactcttgaagaagtaggt
ttatactttaatgttactagagagcggattaggcagatagaggctaaggcattaagacgt
ttaagacatccaaatagaagtgttaagttaaaagattatctagagaattaa
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