Staphylococcus pettenkoferi: CEP67_04390
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Entry
CEP67_04390 CDS
T04943
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spet
Staphylococcus pettenkoferi
Pathway
spet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEP67_04390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spet03019
]
CEP67_04390
03009 Ribosome biogenesis [BR:
spet03009
]
CEP67_04390
Enzymes [BR:
spet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEP67_04390
Messenger RNA biogenesis [BR:
spet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEP67_04390
Ribosome biogenesis [BR:
spet03009
]
Prokaryotic type
rRNA helicases
CEP67_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Flavi_DEAD
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASE36548
LinkDB
All DBs
Position
complement(918598..920088)
Genome browser
AA seq
496 aa
AA seq
DB search
MQNFKELGISAKTVETLHNMGFEEPTPIQQESIPYALEGRDILGQAQTGTGKTGAFGIPL
IEKVVGRDGVQALILAPTRELAMQVAEQLREFSEGQRVRVVTVFGGMPIDRQIKALKKRP
QIVVGTPGRVIDHLNRRTLKTNGIHTLVLDEADEMMNMGFIDDMKFIMDKIPKEQRQTML
FSATMPKAIQNLVQQFMNNPEIVKTMNNELSDPQIEEFYTIVKELEKFETFTNFLDVHRP
DLAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEQTNE
RQMRALRPPHRKEVLRAREKDIKDKVQNWMERDREPRLERIAKQLLDEYSAIELTAAMLQ
ELVESNDDVEVQLTFEKPLARKRGSKPSRKGGKFDKRNNRYKNKRNNRNYKGRGSDKRDR
DRKRTKKGRTFADHKK
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaactttaaagaattagggatctcggctaaaacagtagaaacccttcacaatatg
gggtttgaagagcctacgccgattcaacaggaaagcatcccttacgcccttgagggtcga
gatatattaggacaagcgcaaacaggtactggtaagaccggcgcatttggtattccattg
attgagaaagttgtaggacgtgatggtgtacaagcacttattctagcgcctactcgtgag
ctcgctatgcaagtggctgaacaattgagagaatttagtgaaggtcaacgtgtgcgcgtg
gtaactgtatttggtggtatgccaattgatagacaaatcaaagcgttgaagaaacgccca
caaatcgttgtaggaacacctggacgtgtgattgatcatcttaaccgtcgcacgttaaaa
acaaatggtattcatacgcttgtattagatgaagcggatgaaatgatgaacatgggcttc
attgatgatatgaaatttattatggacaagattccgaaagaacaacgtcaaacgatgtta
ttctcagcaacaatgcctaaagcgattcaaaatcttgttcaacaatttatgaacaatcct
gaaatcgttaagacgatgaataatgaattatcagatccacaaatcgaagaattctatacg
attgtgaaagaacttgagaaatttgagacgtttacgaatttcttagacgttcatcgccca
gacttagcaatcgtctttggtcgtaccaagcgtcgtgtcgacgagttaacgagtgcactt
ttatctaaaggctacaaagcagaagggctacacggggacatcacgcaagcaaaacgttta
gaagtcttgaagaagtttaaaaatgaccagattgatattcttgtagcgacagatgttgcg
gcacgtggactagacatttctggtgtgagtcatgtctataacttcgatatcccacaagat
actgaaagttatacacaccgcatcggacgtacaggtcgtgctggcaaagaaggtatcgct
gtaacattcgttaacccaatcgagatggattacattcgtcaaatcgaacaaacgaatgaa
cgtcaaatgcgtgctttaagaccacctcatcgtaaagaagtcttacgcgctcgtgagaaa
gatattaaggataaagtacagaactggatggaacgtgacagagaaccacgtcttgaacgc
attgctaaacaattacttgatgagtacagtgcgattgagttaacagctgcaatgttacaa
gaactcgttgaatcaaatgacgatgtagaggtacaactcacatttgaaaaaccacttgca
cgtaaacgcggcagcaagccatcacgtaaaggcggtaagttcgataaacgcaataatcgt
tataagaataaacgtaacaaccgcaattataaaggtcgtggatcagacaaacgcgatcgt
gatcgcaaacgtacgaaaaaaggtcgtactttcgcagatcataagaaatag
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