Streptomyces peucetius subsp. caesius: CGZ69_21020
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Entry
CGZ69_21020 CDS
T07792
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
speu
Streptomyces peucetius subsp. caesius
Pathway
speu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
speu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGZ69_21020 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
speu03021
]
CGZ69_21020 (rpoC)
03400 DNA repair and recombination proteins [BR:
speu03400
]
CGZ69_21020 (rpoC)
Enzymes [BR:
speu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGZ69_21020 (rpoC)
Transcription machinery [BR:
speu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGZ69_21020 (rpoC)
DNA repair and recombination proteins [BR:
speu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGZ69_21020 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Orbi_VP1
TarH
Motif
Other DBs
NCBI-ProteinID:
ATW50000
LinkDB
All DBs
Position
4578728..4582681
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLEEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEERKVIGE
GRSFGSTAEAIMAFDARELSLQAKIDIRFPVGTIPPRGWTPPAQEEGEPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFYWAT
RSGVTVAISDVVVPEAKKAIVKGYEEQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLKIAERG
ADGSLRKTEDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDALVAAGVEEVKTRSVL
TCESAVGTCAYCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKLVVTPDDGSDETAFPISKRARL
LVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPPPGTGAWFPSTANNPGSD
PAPSERQSPADSGRADRGGQAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggccaccgcggacgacatc
cggacctggtcccacggcgaggtcaagaagcctgagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtcacccgcgccaaggtgcgccgtgagcggatgggccatatcgaactggccgctccc
gtcactcacatctggtacttcaagggcgttccgtcgcgcttgggctacctgctggacctg
gcgccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgttcgtggac
gaggagcgccgcacgcgcgatctgccgtcgctggaggcacacgtctccgtcgagcgccag
cagatcgagaaccgccgcgacgccgacctcgaggcccgcgccaagaagctcgagacggac
cttgccgagctcgaggccgagggtgccaaggccgacgtgcgccgcaaggtgcgcgagggc
gccgagcgtgagatgaagcagctgcgcgaccgtgcccagcgcgagatcgaccgtctcgac
gaggtgtggaaccggttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacgtacttcgacggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgaggaggaggccgagcgtctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gccttcctgcagacgtccaacagccccaagggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccgcaacaaccgtctgaagcgtctgctggacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggcggtcgacgcc
ctcttcgacaacggccgccgcggccgcccggtcacgggccccggcaaccgtccgctgaag
tccctcagcgacatgctgaagggtaagcagggccgcttccgtcagaacctgctcggcaag
cgagtcgactactcggcgcgttccgtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
accgtggtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgctgggcctcttcttcctgaccacggacgaggaggagcgcaaggtcatcggtgag
ggccggtccttcggctccaccgccgaggcgatcatggcgttcgacgcccgggagctctcg
ctccaggcgaagatcgacatccgcttcccggtcggcaccatcccgccgcgcggctggacc
ccgccggcgcaggaggagggtgagccggagtggcagcagggtgactcgttccgtctgcgc
accacgctgggtcgcgcgctcttcaacgagctgctgcccgaggactaccccttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttctactgggcgacc
cgttccggcgtcaccgtggccatctccgacgtcgtcgttcccgaggcgaagaaggcgatc
gtcaagggctacgaggagcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacccaggagctcatcgcgatctggaccaaggcgaccaacgaggtt
gccgaggcgatgaacgcgaacttcccgaagaccaaccccatcttcatgatggtcaactcg
ggtgctcgtggaaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcc
aacgccaagaacgagaccatcccgcgtccgatcaaggcgtccttccgcgagggtctgtcc
gtgctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgccctg
cgtaccgccgactcgggttacctgacccgtcgtctggtggacgtctcgcaggacgtcatc
atccgcgaggaggactgcggcaccgaccgtggcctcaagctcaagatcgcggagcgtggc
gccgacggcagcctgcgcaagaccgaggacgtcgagacctccgtctacgcccggatgctc
gccgaggacgtcgtcgtcgacggcaaggtcatcgcgcctgccaacgtcgacctcggtgac
gtgctcatcgacgcgctggtcgcggccggtgtggaggaggtcaagacccgctcggtcctg
acctgtgagtccgcggtcggcacctgtgcgtactgctacggccgttcgctggcgaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacgcagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgcccaagggtgtcgccccg
atctcggaggcggccggccgcgtccgtatcgaggagaccgagaagaccaagaagctcgtc
gtcaccccggacgacggcagcgacgagacggccttcccgatctcgaagcgtgcccgtctg
ctggtgggcgagggcgaccacgtcgaggtgggccagaagctcaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctcggccagcgcgcggtccaggtccacctggtcggcgag
gtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgtgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctggtggagcgctcgaagttcgagaccgagaaccgtcgtgtggtcaccgagggc
ggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcgacc
gagtcgtggctgtcggcggcgtccttccaggagacgaccagggtcctcacggacgcggcg
atcaacgccaagtccgactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atccccccgcccggtacgggggcctggttcccgtccaccgcgaacaacccggggtccgac
cccgcaccgagcgagcgccaaagccccgcagattcgggtcgagccgaccgaggaggccag
gccgcgatgtactcggccgtcggctacgacgacatcgactactccccgttcggcacgggc
tccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtag
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