Streptococcus pyogenes Manfredo (serotype M5): SpyM50006
Help
Entry
SpyM50006 CDS
T00497
Symbol
trcF
Name
(GenBank) putative transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spf
Streptococcus pyogenes Manfredo (serotype M5)
Pathway
spf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SpyM50006 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spf03400
]
SpyM50006 (trcF)
Enzymes [BR:
spf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SpyM50006 (trcF)
DNA repair and recombination proteins [BR:
spf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SpyM50006 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
adh_short
RecG_dom3_C
AAA_16
DmsC
Motif
Other DBs
NCBI-ProteinID:
CAM29350
LinkDB
All DBs
Position
5207..8710
Genome browser
AA seq
1167 aa
AA seq
DB search
MDILELFSQNKKVQSWHSGLTTLGRQLVMGLSGSSKALAIASAYLDDQKKIVVVTSTQNE
VEKLASDLSSLLDEELVFQFFADDVAAAEFIFASMDKALSRIETLQFLRNPKSQGVLIVS
LSSLRTLLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDIL
DIYEITQELPYRLEFFGDDIDSIRQFYPETQKSFEQLEGIFINPASDLIFEASDFQRGIE
QLEKALQTAQDDKKSYLEDVLAVSKNGFKHKDIRKFQSLFYEKEWSLLDYIPKGTPIFFD
DFQKLVDKNARFDLEIANLLTEDLQQGKALSNLNYFADNYRELRHYKPATFFSNFHKGLG
NIKFDQMHQLTQYAMQEFFNQFPLLIDEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQ
FRLPLVSANQIVSRESQIVIGAISSGFYFADEKLALITEHEIYHKKIKRRARRSNISNAE
RLKDYNELAVGDYVVHNVHGIGRFLGIETIQVQGIHRDYVTIQYQNSDRISLPIDQIGSL
SKYVSADGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFSFSPDDDL
QRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAVLVPTTVLAQQHYENFKARFENYLVEVDVLSRFRSKKEQAETLEHVQKGQIDIIIG
THRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGGQIFYVYNKVDTIEKKVAEL
QELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKILTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEQAIASKQGKTTVRQKGNTEINLQIDAYLP
DDYIADERQKIDIYKRIREIQSREDYLNLQDELIDRFGEYPDQVAYLLEIALLKHYMDNA
FAELVERKNNQVIVRFEVTSLSYFLTQDYFEALSKTHLKAKISEHQGKIDIVFDVRHQKD
YRILEELMLFGERLSEIKIRKNNSVFK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggatattttagaattatttagtcagaataagaaagtccaatcctggcactctggatta
accaccttaggaagacaactggtaatggggttatcgggttcaagtaaagcattggctata
gcttccgcttatttagatgatcaaaaaaaaatagttgtggttacatcaactcaaaatgag
gttgaaaaattagccagcgatttatctagtttacttgatgaagaacttgttttccaattt
tttgcagacgatgtggctgcagcggaatttatctttgcgtcaatggataaagctctatca
agaatagaaaccctgcaatttttaaggaatcctaaatctcagggcgttttaattgttagt
ttatcaagcttaagaactttattgccaaacccagatgtttttacaaagagtcagattcaa
ctaacagttggagaagattatgatagtgatactcttactaaacaactgatgacaattggc
tatcagaaggtctcacaggtcattagtccgggagaatttagccgtcgaggggatatttta
gatatctatgagattacacaagaattgccttatcgattggaattttttggcgatgatatt
gatagtattaggcaattttatccagaaactcaaaaatcttttgaacaactagaaggtatt
tttattaatccagcaagtgatcttatttttgaggctagtgattttcaacgtggcattgag
caattagaaaaggctctacaaacagcacaagatgataaaaaatcttatttagaagatgta
ttagctgtttcaaaaaacggttttaaacataaggatatccgtaaatttcaatcattattt
tacgaaaaagagtggtcattattagattatattcctaagggaacgccaatcttttttgat
gattttcaaaaactagttgataaaaatgcaagatttgatttagagattgctaatctcttg
acagaagatttacagcaaggaaaggctctttccaatcttaactactttgcagataattat
cgagagcttaggcactataagccagcgaccttcttttcaaattttcataagggacttgga
aatatcaaatttgatcagatgcatcagctaactcagtatgccatgcaggaattttttaat
caatttcctttgttgattgatgagattaaacggtatcaaaaaaatcaaacaacggttatt
gtacaggtagagtctcagtatgcttacgaacgacttgaaaaatcttttcaagattaccaa
tttcgccttcctttagtgagtgctaatcaaattgtttcacgtgaatcacaaattgtaatt
ggagctatctccagtggtttttattttgctgatgaaaagttagcgttaatcacagagcat
gaaatttatcataaaaagatcaaacgacgcgctagacgatctaatattagcaatgctgag
cgtttgaaagattacaatgagttagcagtaggtgattacgtggttcataatgtccatggt
atcggtcgctttcttggaattgaaacgattcaggttcagggaatccatcgagattacgtt
actattcaatatcaaaattcagaccgtatttctcttccaattgaccaaattggtagctta
tcaaagtacgtttctgctgatggaaaagaacctaaaattaataaactcaatgatggtcgt
tttcaaaagacaaagcaaaaggtcgctagacaagtagaagatattgctgatgaccttcta
aaattatatgctgaaagaagtcagcaaaaaggattttcattttcaccagatgatgacttg
cagcgcgcttttgatgatgattttgcttttgtagaaacagaagatcaacttaggtctata
aaggaaattaaagctgatatggagagcatgcaacctatggatcgtcttttagtaggcgat
gtaggatttggtaagacagaagtagctatgagggcagcctttaaagcggtgaatgatcac
aaacaagtagctgtcttagttccaaccacagtcttggcccagcagcattatgaaaacttc
aaagcacgctttgaaaattaccttgttgaggttgacgtcttaagtcgtttccgtagtaaa
aaagagcaagctgaaacactagaacatgtacaaaaaggtcaaattgacattattatcgga
acccatcgactcctatcaaaagatgtggtcttttctgatttaggattaattgtgattgat
gaggaacaacggtttggtgttaagcataaagaaactttaaaggaattaaaaactaaggtt
gacgtcttaaccttaacagctactccgattcctagaaccttacacatgtctatgttaggt
atccgagatttatcggttattgagaccccaccaaccaatcgttatcctgttcaaacctat
gttttggaaaataatccaggtctcgttagagaagctatcattcgtgaaatggatcgtgga
ggacaaattttttacgtttacaataaagttgacactattgaaaagaaagttgcagagcta
caagaattagtcccagaagcttctatcggttttgttcatgggcaaatgagtgaaattcaa
cttgaaaataccttgattgactttataaatggtgattatgatgtccttgtggctacaaca
atcatcgaaacaggagttgacatttctaatgtaaacactttgtttattgagaatgctgat
catatgggattgtcaactttatatcaactgagggggcgcgtcggaagaagtaatcgtatt
gcctatgcttacctgatgtatcgtcctgataagatcctaacagaagtctctgaaaaacgt
ttagaggctattaaaggctttactgaattaggttcaggcttcaagattgctatgcgagat
ttgtctatacgaggagcaggtaatattttaggagcttctcaaagtggctttattgattcg
gtcggttttgaaatgtattctcagttattggaacaggctattgctagcaagcaaggaaaa
acgactgttcgccaaaaaggtaatactgaaatcaatcttcagattgatgcttatttacca
gatgattatattgcagatgagcgccaaaaaattgacatttacaagcgtattcgagaaatt
caatcaagagaagattatctcaatttgcaagatgagctgatagatcgttttggagagtat
cctgatcaagttgcctatttgttagagatagctctgctaaaacattatatggacaatgcc
tttgcggaattagttgaacgcaaaaataatcaggtcattgttcgatttgaagtaacttct
ttaagttatttcttgactcaggattatttcgaagccttatctaaaacccatcttaaagct
aaaattagtgaacatcaggggaaaatcgatatcgtctttgacgttcgccatcaaaaagat
tatagaattttagaagaattgatgttatttggagaaaggcttagtgagataaaaatcaga
aaaaacaattcagtttttaaataa
DBGET
integrated database retrieval system
