Sphingopyxis sp. FD7: SPYCA_0168
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Entry
SPYCA_0168 CDS
T10393
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPYCA_0168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spfd03400
]
SPYCA_0168
Enzymes [BR:
spfd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
SPYCA_0168
DNA repair and recombination proteins [BR:
spfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
SPYCA_0168
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
A6_N
Motif
Other DBs
NCBI-ProteinID:
BBB10910
LinkDB
All DBs
Position
178241..179011
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AA seq
256 aa
AA seq
DB search
MKIATFNINGIKARLPRLVEWLEETQPDVACLQELKSSDETMPTKEIEAAGYGFLYHGQK
GFNGVAILARGADPVEVQRGLAGEEEDEQSRYLEADVHGIRVASIYLPNGNPQPGPKFDY
KLRWMARLRERAKALLAAEIPTILTGDYNVIPHDDDVWDSRAMATDALMQPESRDAYFRL
LGDGWTDALRSRHPAGHVWTYWDYQAGAWQRDHGFRIDHLLLSPALADRLVDAGVDKDHR
GREKASDHAPTWVRLS
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcgcgaccttcaatatcaacgggatcaaggcccgcctgccgcgcctcgtcgaa
tggctcgaggaaacgcagcccgacgtcgcctgcctgcaggaactgaaatcgagcgacgag
acgatgccgaccaaggagatcgaggcggcgggctatggcttcctctatcacggccaaaag
ggtttcaacggcgtcgcgatcctcgcgagaggcgccgatcccgtcgaggtgcagcgcggc
ctggcgggcgaggaggaggacgagcagtcgcgttatctggaggccgacgttcacggcatc
cgcgtcgcgtcaatatatcttcccaacggcaatccgcagccggggccgaaattcgattac
aagctgcgctggatggcgcggctgcgcgaaagggcgaaggcgctgctcgccgccgaaatc
ccgacgatcctgaccggcgactacaacgtcatcccgcacgacgacgatgtctgggattcc
cgcgcgatggcgaccgacgcgctgatgcagcccgaatcgcgcgacgcttattttcgtctg
ctcggcgacggttggaccgacgcgctgcgcagccgtcatccggcggggcatgtctggacc
tattgggactatcaggcgggggcgtggcagcgcgaccacgggttccgcatcgatcatctg
ctgctcagcccggcgcttgccgaccggctggtcgatgcgggcgtcgacaaggatcatcgc
ggccgggaaaaggcgagcgatcacgcgccgacctgggtgcggctgtcctga
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