Sphingopyxis sp. FD7: SPYCA_0397
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Entry
SPYCA_0397 CDS
T10393
Symbol
groEL
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPYCA_0397 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spfd03019
]
SPYCA_0397 (groEL)
03110 Chaperones and folding catalysts [BR:
spfd03110
]
SPYCA_0397 (groEL)
03029 Mitochondrial biogenesis [BR:
spfd03029
]
SPYCA_0397 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spfd04147
]
SPYCA_0397 (groEL)
Enzymes [BR:
spfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SPYCA_0397 (groEL)
Messenger RNA biogenesis [BR:
spfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SPYCA_0397 (groEL)
Chaperones and folding catalysts [BR:
spfd03110
]
Heat shock proteins
HSP60 / Chaperonin
SPYCA_0397 (groEL)
Mitochondrial biogenesis [BR:
spfd03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SPYCA_0397 (groEL)
Exosome [BR:
spfd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SPYCA_0397 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
SPYCA_0397 (groEL)
Exosomal proteins of breast cancer cells
SPYCA_0397 (groEL)
Exosomal proteins of colorectal cancer cells
SPYCA_0397 (groEL)
Exosomal proteins of bladder cancer cells
SPYCA_0397 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
SHOCT-like_DUF2089-C
Motif
Other DBs
NCBI-ProteinID:
BBB11139
LinkDB
All DBs
Position
complement(430208..431827)
Genome browser
AA seq
539 aa
AA seq
DB search
MAAKEVKFASDARDRMLRGVDTLANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEI
ELADKFENMGAQMLREVASKQNDKAGDGTTTATVLAQAIVREGSKAVAAGMNPMDVKRGI
DLAVNAVVKDLEAHARKVSANSEIAQVATISANGDEEVGRILAEAMDKVGNEGVITVEEA
KSLATELETVEGMQFDRGYLSPYFITNAEKLKVELDDPYILIHEKKLSNLQAMLPLLEAV
VQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAVLTGGNV
VSEELGIKLENVTVNMLGRAKKIVIDKDHTTIVDGVGAKADIDARIAQIRQQIETTTSDY
DREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDALHATRAAVEEGILPGGGIALL
RALKALDGLKAANDDQQSGVDIVRRALRAPTRQIADNAGEDGAWIVGKLLESSDYNWGFN
AATGEYEDLVKAGVIDPAKVVRTALQDAASVAALLITTEALVAELPKEEKAAPMPAMDF
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaaggaagtgaaatttgcgtcggacgcgcgtgatcgcatgctgcgcggcgtg
gatacgcttgcgaatgcagtgaaggtcacgctcggccccaagggtcgcaatgtcgtgctc
gaaaaaagtttcggcgcaccgcgcatcaccaaggacggcgtcaccgtggccaaggaaatc
gaactcgccgacaagttcgagaatatgggcgcgcagatgctgcgcgaggtcgcgtcgaaa
cagaatgacaaggccggcgacggcaccacgaccgccacggtgctggctcaggcgatcgtc
cgcgaaggatcgaaagcggtcgccgcgggtatgaatccgatggacgtcaagcgcggcatc
gaccttgccgtgaacgccgtcgtcaaggatcttgaggcgcacgcccgaaaggtcagcgcc
aacagcgagatcgcccaggttgcgacgatatcggcgaacggcgacgaggaagtcggacgc
atccttgccgaagccatggacaaggtcggcaatgagggcgtcatcaccgtcgaggaggcg
aagagcctggcgaccgaactcgagaccgtcgagggcatgcagttcgaccgcggctatctg
tcgccctatttcatcaccaatgccgagaagctgaaggtcgagctcgacgacccctatatc
ctgatccacgagaagaagctgtcgaacctgcaggcgatgctgccgctgcttgaggcggtc
gtgcagtcgggcaagccgctgctcatcatcgccgaggatgtcgaaggcgaagcgctggcg
acgctggtggtcaaccgcctgcgcggcgggctcaaggttgcggcggtcaaggcgccgggc
tttggcgaccgtcgcaaggcgatgctggaggacatcgcggtcctcaccggcggcaatgtg
gtgagcgaagaactgggcatcaagctcgagaatgtgacggtcaacatgctcggccgcgcc
aagaagatcgtgatcgacaaggatcatacgacgatcgtcgatggcgtcggtgccaaggcc
gacatcgacgcccgtatcgcccagatccgccagcagatcgagacgacgaccagcgattat
gaccgcgaaaagttgcaggagcgcctcgccaagcttgccggcggcgttgcggtgatccgc
gtcggcggcgcaaccgaggtcgaagtcaaggaacgcaaggaccgggtcgacgacgcgctt
catgcaacgcgcgcggcggtcgaggaaggcattcttcccggcggcggcattgcgctgctc
cgtgcgctgaaggcgctcgacggcctcaaggcggcgaacgacgatcagcagtcgggcgtt
gacatcgtccggcgcgcgctccgcgcgccgacgcgccagatcgccgacaatgcgggcgag
gacggcgcgtggatcgtcggcaagctgctcgaaagcagcgactataactggggcttcaac
gccgccaccggcgaatatgaagacctggtcaaggccggcgtgatcgacccggcaaaggtc
gtccgcacggcgctgcaggacgcggcctcggtcgccgcgctgctgatcaccaccgaagcg
ctcgttgccgagttgccgaaggaagagaaagccgcgccgatgccggcgatggatttctga
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