Sphingopyxis sp. FD7: SPYCA_0874
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Entry
SPYCA_0874 CDS
T10393
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
spfd Sphingopyxis sp. FD7
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spfd03016
]
SPYCA_0874
Enzymes [BR:
spfd01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SPYCA_0874
Transfer RNA biogenesis [BR:
spfd03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SPYCA_0874
Prokaryotic type
SPYCA_0874
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
Motif
Other DBs
NCBI-ProteinID:
BBB11616
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All DBs
Position
937581..938537
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AA seq
318 aa
AA seq
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MDGWIILDKPMGLGSTQAVGAVKRVCREAGLGKVKVGHGGTLDPLASGVLPIALGEATKL
TGRMLDASKVYDFTIAFGTETAGLDAEGDIVAVSDVRPTLADIEAVLPRFTGPIEQVPPA
YSAIKIDGERAYDRARKGEAVEMKARGVTIYSLRHAGLDPASIAAGAGWTPDQVRGDEGG
EAWLDSITLTAHVSKGTYIRSLARDIARAVGSVGHVTMLRRTKAGPFTLEQAISLDKLNA
FGQGAAQSEVFLPFEAGLVDIPALDLSPEAAGAIRQGRVWTGVSTHDGLYWGRDAENRPV
ALIEALAGTLKVVRGFNL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
gtggacggctggatcattctcgacaaacccatggggctcggatcgacgcaggcggtcggc
gcggtcaagcgcgtgtgccgcgaggcggggctgggcaaggtcaaggtgggccatggcggc
acgctcgacccgctcgcgtcgggggtgctgccgatcgcgctgggtgaggcgacgaagctc
accggacggatgctcgatgcgagcaaggtctatgatttcaccatcgccttcgggaccgaa
accgcgggcctcgatgccgagggtgacatcgtggcggtgagcgacgtgcggccgacgctg
gcggacatcgaggcggtgctgccgcgcttcaccgggccgatcgagcaggtgcctccggct
tattcggcgatcaagatcgacggggagcgggcttatgaccgcgcgcgcaagggcgaggcc
gtcgagatgaaggcgcggggggtgacgatatactcgcttcgtcatgccggacttgatccg
gcatccattgccgcgggcgccggatggaccccggatcaagtccggggtgacgagggtggg
gaagcgtggttggattcgatcactctcaccgcccatgtctcaaagggcacctatatccgc
tcgctcgcgcgcgacattgcccgcgccgtcggcagtgtcggccatgtcacgatgctccgc
cggacgaaagccgggccatttacgctcgaacaggcgatttcgctggacaaattgaacgct
ttcggccaaggggccgcgcaatcagaagtatttctgccgttcgaggcagggctggtcgac
atcccggctcttgacctttccccggaagcggcaggggcgatccgtcagggtcgcgtctgg
accggggttagcacgcacgacgggctctattggggacgcgacgccgaaaaccggcccgtt
gccttgatcgaggctttggcgggaacgctgaaggtcgtgcggggcttcaatctgtaa
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