Sphingopyxis sp. FD7: SPYCA_0901
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Entry
SPYCA_0901 CDS
T10393
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPYCA_0901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spfd03021
]
SPYCA_0901
03400 DNA repair and recombination proteins [BR:
spfd03400
]
SPYCA_0901
Enzymes [BR:
spfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPYCA_0901
Transcription machinery [BR:
spfd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPYCA_0901
DNA repair and recombination proteins [BR:
spfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPYCA_0901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF211
IDH
HHH_XRCC3_RpoA
TmoB
Motif
Other DBs
NCBI-ProteinID:
BBB11643
LinkDB
All DBs
Position
complement(964019..965077)
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AA seq
352 aa
AA seq
DB search
MTVNIRNWQELKKPSNLEIKAGGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMEGEGPKRLQLSATGPATVKAGDI
MVSGDIKVMNPNHVICHLDEGATLNMELVADTGKGYVPATANRPADAPIGLIPVDSLYSP
VRQVAYKVDNARIGQELDYDKLNLTVETDGTVTPEDAVAYAARILQDQLQVFVHFEEAMN
DSGLIGMAAPSAASDESDVNQLNRFLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatccggaactggcaggaattgaagaagcccagcaacctggaaatcaag
gccggcggcgacggcaagcgcaaggcgaccttcgttgccgagccgcttgaacgcggtttc
ggtctgacgctgggcaacgcgctgcgccgcgtgctgctctcgtcgctccagggcgcggcg
atcacctcgatcaagatcgaaaatgtgctgcacgagttttcgagcctcgccggcgtgcgt
gaagacgtcaccgacatcgtgctcaacgtcaagcagatcgcgctcaagatggagggcgaa
gggccgaagcggctccagctttcggcgaccggcccggcgaccgtcaaggcgggcgacatc
atggtgtcgggcgacatcaaggtgatgaacccgaaccatgtcatctgccacctcgacgag
ggcgcgacgctgaacatggaactcgtcgccgacaccggcaagggctatgtccccgcgacc
gccaaccgtccggccgacgcgccgatcgggctgatcccggtcgactcgctctattcgccg
gtgcgccaggtcgcctacaaggtcgacaatgcccgcatcgggcaggaactggactatgac
aagctgaacctgaccgtcgaaaccgacggcacggtgacgcccgaagatgccgtcgcttac
gccgcgcgcatccttcaggaccagctccaggtcttcgtccacttcgaggaagcgatgaac
gacagcggcctcatcggcatggcggccccctcggccgccagcgacgagtccgacgtcaat
cagctcaaccgcttcctcctgaagaaggtcgacgagctcgaactgtcggtccgttcggcc
aactgcctgaagaacgacaatatcatctatatcggtgacctggttcagaagaccgaagcc
gaaatgctccgcacgccgaacttcggccgcaagtccctgaacgaaatcaaggaagtgctg
tcgtcgatgggcctgcgcctcggcatggacatccccggctggccgcccgaaaatatcgag
gaaatggccaagaagctggagcaggaactgctggggtaa
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