Sphingopyxis sp. FD7: SPYCA_1138
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Entry
SPYCA_1138 CDS
T10393
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPYCA_1138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spfd03019
]
SPYCA_1138
03016 Transfer RNA biogenesis [BR:
spfd03016
]
SPYCA_1138
Enzymes [BR:
spfd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SPYCA_1138
Messenger RNA biogenesis [BR:
spfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPYCA_1138
Transfer RNA biogenesis [BR:
spfd03016
]
Prokaryotic type
tRNA degradation factors
SPYCA_1138
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BBB11880
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All DBs
Position
1222843..1225143
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AA seq
766 aa
AA seq
DB search
MKKPKPQPGLPSREQILRFIEDSPGAIGKREIAKHFGVRGADKIALKALLKDMTDEGLVD
MAPGRAFHKHGGLPRVTVLRVAAVEGDAVWAVPDRWEGAGAPPRLRVMEKGRRGALGVGD
RILARTEERGGGHVAHPMKTLQAGGETIIGVLVADTGPGGKPMTWLRPADKRARFDFAVA
DMGDAAIGDLVRAELSGRGPATKARVIDRIGDPFAPRSLSMIAIAKHEIPHVFGDEVIDE
AERSATLPLTPDGREDLRDLPILAIDPADARDHDDAVWAIPDDDPGNKGGYRAIVAIADV
SFYVRPDGALDREARRRGNSVYFPDQVVPMLPETLSAGVCSLKAGQDRAAMACHLTVDRH
GKVTSWRFTRALVRLRANIAYERAQAAFDADVPDAGWDEDVLPALRQLWACWALLAKARA
ARAPLDLDLPERQVILDEQGGIAEIRVRERLDAHRLIEDYMIAANVAAAKALEAKKSPVM
YRIHEPPSREKLVSLKDYLETFEQSFALGQVITPAVFNRLIDGFSGDDRLPEIMEAILRS
QTQAYYGPANSGHFGLALGSYAHFTSPIRRYADLIVHRALVDSWRLEVPGKPKGLPAKTG
LGEADAKGLSRIGEAISALERRAMEAERETIDRYVAAYLAGKVGEIVAARITGVQPFGFF
ATVDGLGGDGLVPVSTLGSERFFYDEAARTLDSEHGRVSYSVGQRLELRLMDANPVSGAL
RFALPDAPEGGFRNRPPRRDGVKKAGKPMVGKRGRPANIKHKGKRR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagcccaagccgcaacccggcctgccctcgcgcgagcagattttgcggttcatc
gaggacagccccggcgcgatcgggaagcgcgagattgccaagcatttcggcgtacgtggc
gccgacaagatcgcgctcaaggccttgctcaaggacatgaccgacgaagggctggtcgac
atggcgccggggcgtgcctttcacaaacatggcgggttgccgcgcgtcaccgtgctgcgc
gtcgcggcggtcgagggcgatgccgtctgggcggtgcccgatcgctgggagggcgccggg
gcgccgccgcggctgcgcgtgatggagaagggacggcgcggggcgctcggggtcggcgac
cgcatcctcgcgcgcaccgaggagcgcgggggcgggcatgtcgcgcacccgatgaagaca
ttgcaggcgggcggcgagacgatcatcggcgtgctcgtcgccgacaccggccccggcggc
aagccgatgacctggctgcgccctgccgacaagcgcgcgcgcttcgacttcgcggtggcg
gacatgggcgatgccgcgatcggcgacctggtgcgcgccgagctgtcggggcgtggcccc
gcgaccaaggcgcgcgtgatcgaccgcatcggcgatcccttcgcgccgcgctcgctcagc
atgatcgcgatcgcgaagcatgaaatcccgcacgtctttggcgacgaggtcatcgacgag
gccgagcgctcggcgacactgccgctgacccccgacgggcgtgaggatctgcgcgatctg
cccatccttgcgatcgaccccgccgacgcgcgcgaccatgacgatgccgtctgggcgatc
cccgacgacgatcccggcaacaagggcgggtatcgcgccatcgtcgcgatagccgacgtc
agtttttatgtccgtcccgacggcgcgctcgaccgcgaggcgcggcggcgcggcaacagc
gtctatttccccgaccaggtcgtaccgatgttgcccgagacgctgtcggcgggcgtgtgt
tcgctgaaagccgggcaggatcgcgccgcgatggcgtgccacctgaccgtcgacaggcat
ggcaaggtgacgtcatggcgcttcacgcgcgcgctggtgcggctgcgcgcgaacatcgcc
tatgaacgcgcgcaggcagcctttgatgccgacgtgcctgacgcgggatgggacgaggat
gtgcttccggcgctccgccagctctgggcgtgctgggcgctgctcgccaaggcgcgcgcg
gcgcgggcgccgctcgacctcgacctgcccgagcggcaggtcatcctcgacgaacagggc
ggcatcgccgaaatccgcgtgcgcgaaaggctcgacgcgcaccggctgatcgaggattat
atgatcgcggcgaatgtcgcggcggcgaaggcgctggaggcgaaaaagtcgcccgtgatg
taccgcatccacgaaccgccgagccgcgagaagctggtcagcctgaaggattatctggag
acgttcgagcagagctttgcgctggggcaggtcattacgcccgcggtgttcaaccgcctg
atcgacggcttttcgggcgacgatcgcctgcccgaaatcatggaggcgattttgcgcagc
cagacgcaggcctattacggccccgccaactcggggcatttcgggctcgcgctcggctcc
tacgcgcatttcacctcgccgatccgccgctacgcagacctgatcgtccaccgggcgctg
gttgattcctggcggctcgaagtgccgggcaagcccaaaggcctgccggcgaaaaccggg
ttgggcgaagccgacgccaagggcttgtcgcgcatcggcgaagcgatcagcgcgctcgaa
cggcgggcgatggaggccgaacgcgagacgatcgaccgctatgtcgcggcatatctggcg
ggcaaggtgggagagatcgtcgcggcgcgcatcacgggggtgcagccgttcggctttttc
gccaccgtcgacgggcttggcggcgacgggctggtgccggtgtcgacgctgggcagcgag
cgcttcttctatgacgaggcggcgcggacgctcgacagcgagcatggccgcgtcagctat
agcgtcggccagcggctcgaactcaggctgatggatgccaatccggtaagtggcgcgctg
cgcttcgcattgcccgacgcgcccgaaggggggttccgcaatcggccgccgcggcgcgac
ggggtgaagaaggcaggcaagcctatggtcggcaaacgcgggcggcctgcgaatatcaag
cataagggcaagcgtcgctga
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