Sphingopyxis sp. FD7: SPYCA_1777
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Entry
SPYCA_1777 CDS
T10393
Name
(GenBank) DNA polymerase III subunits
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03030
DNA replication
spfd03430
Mismatch repair
spfd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPYCA_1777
03430 Mismatch repair
SPYCA_1777
03440 Homologous recombination
SPYCA_1777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spfd03032
]
SPYCA_1777
03400 DNA repair and recombination proteins [BR:
spfd03400
]
SPYCA_1777
Enzymes [BR:
spfd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SPYCA_1777
DNA replication proteins [BR:
spfd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SPYCA_1777
DNA repair and recombination proteins [BR:
spfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SPYCA_1777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DNA_pol3_delta2
DUF3646
DNAX_ATPase_lid
AAA
RuvB_N
AAA_5
AAA_22
AAA_16
AAA_30
AAA_14
AAA_24
Cdc6_lid
AAA_19
AAA_assoc_2
PIF1
Glyco_tranf_2_5
EF-hand_1
AAA_2
AAA_18
DUF815
Motif
Other DBs
NCBI-ProteinID:
BBB12519
UniProt:
A0A2Z5UM00
LinkDB
All DBs
Position
complement(1891117..1892817)
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AA seq
566 aa
AA seq
DB search
MSDSADDETPMLGMDLPETAPPAAASGPYRVLARKYRPQTFAELIGQDAMVKTLGNAIAR
DRLAHAFLMTGVRGVGKTSTARLIAKALNCIGPDGQGGPTIDPCGVCEPCRAITEGRHID
VIEMDAASNTGVDDVREIIEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPPH
VKFLFATTEVGKVPVTVLSRCQRFDLRRITPDMLFAHFSSILQKEGVEADAPAIWLIASA
AEGSVRDGLSILDQAIAHADLDGGGRISADQVRAMLGLSDRSSIAQLMAAILEGNSGGAI
DLARAQYALGIEPVAMVRGLMDLTHAVTLAKVSRHDDPALAAADRERIADWAQKLGFAPL
NRLWQLLLKGHEEVLRANNPLEHLEMLLLRVIYAASLPDPGELARLLESGGVPTMPVAAP
PAAASGPESATAEPTPTDEAPASALTIAQIHHLLESTGNHQLARQVYDDVQVLELEPGRL
VYAPAPMLDGDFARRLGEALFSQTGSRWQVREGVGEGRPSLGQMKAAQLADNDARIRELP
VVKAALAAFPDARLVEGDNNQHRSSP
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattccgccgacgacgaaaccccgatgctgggcatggacctgccggagaccgcg
ccgcccgccgccgccagcggtccctaccgcgtcctcgcgcgcaaatatcgtccgcaaacc
tttgccgagctgatcgggcaggatgcgatggtgaagacgctcggcaatgcgatcgcgcgc
gaccggctcgcgcacgcctttctgatgaccggggtgcgcggcgtgggcaagacgtcgacc
gcgcggctgatcgccaaggctttgaattgcatcggtcccgacgggcagggcgggccgacg
atcgacccgtgcggggtgtgcgagccgtgccgcgcgatcaccgaaggccgccatatcgac
gtgatcgagatggatgccgcgtcgaacaccggcgtcgacgatgtgcgcgagatcatcgag
gcggtgcgctacgccgccgtgtcggcgcgctacaagatctacatcatcgacgaagtgcat
atgttgtcgcgtaacgcgttcaacgcgctcttgaaaacgctcgaagagccgccgccgcac
gtcaagttcctcttcgcgaccaccgaagtgggcaaggtgccggtgacggtgctctcgcgc
tgccagcgcttcgacctgcgccgcatcacccccgacatgctgttcgcgcatttcagctcc
atcctgcaaaaggagggcgtcgaggccgatgcgccggcaatctggctgatcgcgagcgcg
gccgaagggtcggttcgcgacgggctttcaattctcgaccaggcgatcgcgcacgcggac
ctcgacggcggtggaaggatcagcgccgatcaggtgcgcgcgatgctcggtctgtccgac
cgttcgtcgatcgcgcagttgatggcggcgatccttgaagggaacagtggcggcgcaatc
gacctcgcccgcgcgcaatatgcgctggggatcgaacccgttgcgatggtccgcggcctg
atggacctcacccacgcggtcacgctcgccaaggtgtcgcgccacgacgatcccgcgctc
gccgccgccgaccgcgagcgtatcgccgactgggcgcaaaagctgggtttcgcacccttg
aaccggctatggcaattgctgctgaaggggcatgaggaggtgctccgcgcgaacaatccg
ctcgaacatctcgaaatgctgctgctgcgcgtcatctatgccgcatcgctccccgatccg
ggcgagctggcccggctgctcgaatcgggcggcgtgccgacgatgcccgttgccgccccg
cccgcagcggcgtcgggaccggaaagtgcgacggccgagccgacgccgacagacgaagct
ccggcgagcgcactcaccatcgcgcagatccaccatctgctcgaaagcaccggaaaccat
cagcttgcacggcaagtctatgatgacgtccaggttctggagctcgaacccggccgcctc
gtctatgcccccgcgccgatgctcgacggcgatttcgcacggcggctcggcgaggcgctg
ttcagccagacggggagccgttggcaggtgcgcgaaggcgtgggcgaggggcggcccagc
ctggggcagatgaaggcggcgcagcttgccgacaatgatgcgcgcatccgcgaactgccc
gtcgtaaaggccgccctggccgcttttcccgacgcgcggcttgtcgaaggcgacaataat
cagcataggtccagtccatga
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