Sphingopyxis sp. FD7: SPYCA_1900
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Entry
SPYCA_1900 CDS
T10393
Symbol
carB
Name
(GenBank) carbamoyl phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd00220
Arginine biosynthesis
spfd00240
Pyrimidine metabolism
spfd00250
Alanine, aspartate and glutamate metabolism
spfd01100
Metabolic pathways
spfd01110
Biosynthesis of secondary metabolites
spfd01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
SPYCA_1900 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
SPYCA_1900 (carB)
00220 Arginine biosynthesis
SPYCA_1900 (carB)
Enzymes [BR:
spfd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
SPYCA_1900 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
Dala_Dala_lig_C
ATP-grasp
ATPgrasp_Ter
ATP-grasp_3
ATP-grasp_4
CoA_binding_2
ATP-grasp_5
MucBP_2
Motif
Other DBs
NCBI-ProteinID:
BBB12642
LinkDB
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Position
complement(2013400..2016720)
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AA seq
1106 aa
AA seq
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MPKRTDIKSILVIGAGPIVIGQACEFDYSGTQAIKALKEEGYRIVLVNSNPATIMTDPDL
ADATYVEPITPEIVAKIIAKERPDAVLPTMGGQTALNTALALFNDGTLAKYGVEMIGADA
EAIDKAEDRQKFRDAMDRIGLESARSGVAHTLDEAFAVLERTGLPAIIRPSFTLGGTGGG
IAYNREEFEHIVRGGLIASPTTEVLIEESLLGWKEYEMEVVRDRKDNCIIICSIENVDPM
GVHTGDSITVAPALTLTDKEYQIMRSASIAVLREIGVETGGSNVQFAVNPKDGRLIVIEM
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEIMNDITGVTPASFEPTIDYVVTKIPR
FAFEKFKGAEATLSTAMKSVGEVMAIGRTIHESLQKALRGLETGLSGFNFVDRLVGASHE
QLRNELAQRTPDRLLNTAQAIREGLPLEEINRVAGYDMWFLERIAEIVAAEREVCENGLP
RDAAGLRKLKAMGFSDKRLAYLALQSANLQPGTRRATARGSGLIHEAVKAMTGGVTEAEV
RALRHKLGVRPVFKTIDTCAAEFQAKTPYLYSTYEVPTFGEPECEANPSSARKVVILGGG
PNRIGQGIEFDYCCCHACFALEEAGYETIMVNCNPETVSTDYDTSDRLYFEPLTAEDVLE
ILHVEMSRGTLAGVIVQFGGQTPLKLAQALAEAGIPILGTSPDAIDLAEDRERFAALVNR
LGLKQPANGIARSREEAVAVAARIGYPVLTRPSYVLGGRAMEIVDDSAQLEHYIETAVQV
SGDSPVLIDRYLRDAIEVDVDALCDGTDVVVAGVLQHIEEAGVHSGDSACSIPPYSLPAD
IIAEIERQTDALARALQVRGLMNIQFAVQGGEVYLIEVNPRASRTVPFVAKAVGSPIAKI
AARVMAGEKLADLPRINRDIKHVAVKEAVFPFARFPGTDPVLSPEMKSTGEVMGIDRDFN
LAFAKAQLGAGDRLPTDGRLFVSVKDSDKPRIVGAVKQLRAWGWKVIATGGTADYLAGEG
IDVERVNKVAEGRPHIVDRIKDGDVQLIFNTTEGWQSLQDSQSIRASALAADIAYYTTAA
ASDAATQAIGALRAHSLEVKPLQDYY
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaagaaccgacataaaatccatcctcgtcatcggcgccggcccgatcgttatc
ggtcaggcgtgcgagttcgactattcggggacgcaggcgatcaaggcgctcaaggaggag
ggctatcgcatcgtcctcgtcaactccaacccggcgacgatcatgaccgatcccgacctc
gccgacgccacttatgtcgagccgatcacgcccgagatcgtcgcgaagatcatcgcgaag
gagcgccccgatgcggtgctcccaacgatgggcgggcagaccgcgctcaacaccgcgctg
gcgctgttcaacgacgggacgctcgcgaaatatggcgtcgagatgatcggcgccgatgcc
gaggcgatcgacaaggccgaggaccggcagaagttccgcgacgcgatggacaggatcggg
ctggaaagcgcgcgcagcggcgtcgcgcacacgctggacgaggcgttcgcggtgctcgaa
cgcaccgggctgcccgcgatcatccgcccgtctttcacgctcggcggcaccggcggcggg
atcgcgtataatcgcgaggagttcgagcatatcgtccgcggcgggctgatcgcgtcgccg
accaccgaagtcctgatcgaggaatcgctcctcggctggaaagaatatgagatggaggtg
gtgcgcgaccgcaaggacaattgcatcatcatctgctcgatcgagaatgtcgatccgatg
ggcgtgcataccggcgattccatcaccgtcgcccccgcgctgacgctgaccgacaaggaa
tatcagatcatgcggagcgccagcatcgcggtgctgcgcgagatcggggtcgagacgggc
gggtcgaacgtccagttcgcggtcaatcccaaggacggccgcctgatcgtgatcgagatg
aacccgcgcgtgtcgcgctcgtcggcattggcgtcgaaggcgacgggtttcccgatcgcc
aaggtcgcggcgaagctcgcggtcggctacacgctcgacgagatcatgaacgacatcacc
ggggtcaccccggcgtcgttcgagccgacgatcgattatgtcgtcaccaagatcccgcgc
tttgcgtttgaaaagttcaagggcgccgaagcgacgctgtcgaccgcgatgaaatcggtc
ggcgaagtgatggcgatcgggcggacgatccacgagtccctgcagaaggcgctgcgcggc
ctcgaaacggggctgtcgggcttcaatttcgtcgaccggctcgtcggcgcgagccatgag
cagctgcgcaacgagctggcgcagcggacccccgaccggctgctcaacaccgcccaggcg
atccgcgaggggctgccgctcgaagagatcaaccgcgtcgcgggttacgacatgtggttc
ctcgagcgcatcgccgagatcgtcgcggccgagcgcgaggtgtgcgaaaacggcctgccg
cgcgatgccgcagggctgcgcaagctgaaagccatgggcttctccgacaagcgccttgcc
tatctggcgctccagtcggcgaaccttcaacccggcacgcgccgcgcgaccgcgcgcggc
agcgggctgatccacgaagcggtgaaggcgatgaccggcggggtgaccgaggccgaggta
cgcgcgctgcgccacaagctcggcgtgcgcccggtgttcaagacgatcgacacctgcgcc
gcggagtttcaggccaagacgccctatctctattcgacctatgaagtgccgaccttcggt
gaacccgaatgcgaggcgaacccctcgtccgccaggaaggtcgtgatcctgggcggcggc
ccgaaccggatcgggcaggggatcgagttcgactattgctgctgccacgcctgcttcgca
ttggaagaggcgggctatgaaaccatcatggtcaactgcaatcccgaaaccgtgtctacc
gactatgacacgtcggaccgcctctatttcgagccgctgaccgcggaggatgtgctggaa
atcctgcacgtcgaaatgtcgcggggcacgctggcgggcgtgatcgtccagttcggcggg
cagacgccgctcaagctggcgcaggcgctggcagaggccggcattccgatcctcggcacg
tcgcccgatgcgatcgacctcgccgaagaccgcgagcgtttcgcggcgctcgtcaaccgg
ctcggcctcaagcagcctgcaaatggcattgcgcgcagccgcgaggaagccgtcgcggtc
gccgcgcgcatcggttatccggtgctgacgcgcccctcctatgtgctcggcggccgcgcg
atggagatcgtcgacgattccgcgcagctcgaacattatatcgagaccgcggtgcaggtg
tcgggggattcgccggtgctgatcgaccgctatctgcgcgacgcgatcgaggtcgacgtc
gatgcgctctgcgacggcaccgacgtggttgtcgcgggcgtgctccagcatatcgaggaa
gccggggtccattcgggcgacagcgcctgctcgatcccgccctacagcctgcccgccgat
attatcgccgagatcgagcggcagaccgacgcgctcgcgcgcgcgctgcaagtgcgcggg
ctgatgaacatccagttcgccgtgcagggcggcgaggtctatctgatcgaggtcaacccg
cgcgcgagccgcacggtgcctttcgtcgccaaggcggtgggctcgccgatcgccaagatc
gccgcgcgcgtgatggcgggcgaaaagctcgccgacctgccgcggatcaaccgcgacatc
aagcatgtcgccgtcaaggaagcggtgtttcctttcgcgcgcttccccggcaccgatccg
gtgctgtcgcccgagatgaagtccaccggcgaagtcatgggaatcgatcgtgatttcaac
ctggcctttgccaaggcgcagctcggcgcgggcgaccgcctgccgaccgacggccgcctc
ttcgtgtcggtgaaggacagcgacaagccgcgcatcgtcggcgcggtcaaacagcttcgc
gcctgggggtggaaggtgatcgcgaccggcggcaccgccgactatctggcgggcgaggga
atcgacgtcgagcgcgtgaacaaggtcgccgaaggccgcccgcacatcgtcgaccggatc
aaggatggcgatgtgcagctgatcttcaacaccaccgaaggctggcagagcttgcaggat
tcgcaatcgatccgcgcttcggcgcttgccgccgacatcgcctattacaccacggctgcc
gccagtgatgccgcgacgcaggcgatcggggcgctgcgcgcgcactcccttgaagtaaag
ccgcttcaggactattattga
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