Sphingopyxis sp. FD7: SPYCA_2059
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Entry
SPYCA_2059 CDS
T10393
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
spfd Sphingopyxis sp. FD7
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spfd03009
]
SPYCA_2059 (rimO)
Enzymes [BR:
spfd01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
SPYCA_2059 (rimO)
Ribosome biogenesis [BR:
spfd03009
]
Prokaryotic type
ribosomal protein modification factors
SPYCA_2059 (rimO)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
Motif
Other DBs
NCBI-ProteinID:
BBB12801
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Position
2179437..2180765
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AA seq
442 aa
AA seq
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MVSLGCPKALVDSERILTKLRADGYGLSPDYAGADVVLVNTCGFLDSAKEESLEAIGEAM
AENGRVIVTGCMGNEAEAIRARFPNVLAVTGAHQYEQVVDAVHDAAPPTQGPFVDLVPEG
GLKLTPRHYSYLKISEGCNHSCAFCIIPDLRGKLVSRRIDAVLREAEKLVAAGTKELLVI
SQDTSAYGVDIRHDPRQWHGREVRAHMTDLARELGRLRTGEGHAPWVRLHYVYPYPHVDA
VIPLMAEGLLTPYLDIPFQHASPSVLKRMKRPANEAKVLERLKNWRAIAPDIAIRSSFVV
GFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVAGAQANALPDPVPEEVKEERFQRIMAK
TAAISAAKLEAKIGRTLPVIIDEIGDADEEGSIGATGRSQADAPEIDGHVYLRDVAATLK
AGDIVDVVVEDADEHDLFGVVT
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcgctcggctgccccaaggcgctcgtcgacagtgaacggatattgaccaagctg
cgcgccgacggttacggcctgtcgcccgactatgcgggcgccgacgtcgtgctcgtcaac
acctgcggctttctcgactcggcgaaggaagaaagcctcgaggcgatcggcgaggcgatg
gccgagaatggccgcgtcatcgtcaccggctgcatgggcaatgaggccgaagcgatccgc
gcgcgcttcccgaacgtcctcgcggtcaccggcgcgcatcaatatgagcaggtcgtcgat
gccgtccacgacgccgcaccgccgacgcaagggccgttcgtcgacctcgttcccgaaggt
gggctgaaactgacgccgcgccactacagctacctcaagatcagcgaaggctgcaaccac
agctgcgccttctgcatcatccccgacctacgcggcaaacttgtcagtcgccgcatcgac
gcggtgctgcgcgaggccgaaaaactcgtcgcggcgggaacgaaggagctgctggtcatc
agccaggacacctcggcctatggcgtcgatattcgccacgacccgcgccaatggcacggc
cgcgaggtgcgcgcgcacatgaccgacctcgcgcgcgaactcggccggctgcgcaccggc
gagggccacgcgccgtgggtgcgcctccactatgtctatccctatccgcacgtcgacgcc
gtcatcccgctgatggccgaagggctgctgacgccttatcttgacatccccttccagcac
gcgagccccagcgtcctcaagcgcatgaagcgccccgcgaacgaagcgaaggtgctcgaa
cggctgaagaattggcgcgccatcgcccccgacatcgcaatccgctccagcttcgtcgtc
ggcttccccggcgagaccgaggcggatttccaatatctgctcgactggctcgacgaagcg
cagctcgaccgcgtcggcgccttccgcttcgagcccgtcgcgggcgcgcaggcgaatgcc
ctgcccgaccccgtgcccgaagaggtcaaggaggaacgcttccagcggatcatggcaaaa
accgccgcgatcagcgccgccaagctggaggccaagatcggccgcaccctccccgtcatc
atcgacgagatcggcgacgccgacgaagagggcagcatcggcgcgacgggccggtcacag
gccgacgcgcccgaaatcgacggccacgtctacctccgcgacgtcgcggcgacgctgaag
gcgggcgacatcgtcgacgtcgtcgtcgaggatgccgacgaacacgacctgttcggcgtg
gtgacctga
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