Sphingopyxis sp. FD7: SPYCA_2390
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Entry
SPYCA_2390 CDS
T10393
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPYCA_2390 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spfd03400
]
SPYCA_2390 (uvrB)
DNA repair and recombination proteins [BR:
spfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPYCA_2390 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPYCA_2390 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_16
UB2H
DUF87
SWI2_SNF2
AAA_22
FATC
Kinesin
AAA_33
Orbi_NS3
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
BBB13132
LinkDB
All DBs
Position
2514511..2516697
Genome browser
AA seq
728 aa
AA seq
DB search
MAIQIRTSLDEIDTAEGYVPHRPARPDKVEGGKRFELVSDYEPAGDQPTAIRELVDTARA
GERDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPNNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQVADSREIIRKLVALQYKRNDQAFARGNFRVRGDSLEIFPSHYEDM
AWRVSFFGDEIEEITEFDPLTGKRIASLNSIRIYANSHYVTPGPTLKQATEAIRHELAER
LKELEAEGRLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
DNALLFVDESHQTIPQIGAMSKGDHRRKITLAEYGFRLPSCIDNRPLRFAEWDMMRPQTI
SVSATPGTWEMERTQGVFAEQVIRPTGLIDPPVEIKPVEEQVDDLIAEAKKTAAAGYRTL
VTTLTKRMAEDLTEFLHEAGLKVRYMHSDVETLERIEIIRDLRLGVFDVLVGINLLREGL
DIPECGLVAILDADKEGFLRSETSLVQTIGRAARNVDGRVILYADRITGSMERALRETDR
RRAKQQAYNEAHGITPTTIKRNIGDIIAHVASKDGVVIDIGEDKPAHMVGHNLRAYIQEL
EKKMRDAAADLEFEEAGRLRDEIRKLEADELGLPPDQQIAPRVGRSNEGKPGTRKGRFGK
QSKTKWGR
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggcaatccagattcgcacctcgctcgacgaaatcgacaccgccgaaggctatgtcccg
caccgccccgcccgccccgacaaggtcgagggcggcaaaagatttgaactggtcagcgat
tatgaacccgcgggtgatcagcccaccgcgatcagggagctggtcgataccgcgcgcgcg
ggcgagcgcgatcaggtgctgctcggcgtcaccggatcgggcaagaccttcaccatggcg
aaggtgatcgaggaattgcagcgcccggcgctgatccttgcgcccaacaagatcctcgcg
gcgcagctctatggcgagttcaagagctttttccccaacaatgcggtcgagtatttcgtc
agctattacgactattatcagcccgaggcctatgtgccgcgcagcgacacctatatcgag
aaggagtcgagcgtgaacgaggcgatcgaccggatgcgccactcggcgacgcgcgccttg
ctcgagcgcgacgacgtgatcatcgtcgcctcggtgagctgcctttacggcatcggttcg
gtcgagacgtactccgcgatgatcttcgatttgaagaagggacaggtcgccgacagtcgc
gaaatcatccgcaagcttgtcgcgctgcaatacaagcgcaacgatcaggcctttgcgcgc
ggcaatttccgcgtccgcggtgacagcctcgaaatcttcccctcgcactatgaggacatg
gcgtggcgtgtcagcttcttcggcgacgagatcgaggagatcaccgagttcgacccgctg
accggcaagaggatcgcgagcctgaacagcatccgcatctacgccaacagccactatgtc
acgccgggtccgacgctgaaacaggcgaccgaggcgatccgccacgagctcgccgaacgg
ctgaaggagctggaggccgaaggccgcctgctcgaagcgcagcggctcgaacagcgcacc
aatttcgacctcgaaatgatcgccgccaccggaagctgcgcggggatcgaaaattacagc
cgcttcctgaccggccgcctgcccggcgagccgccgccgacgctgttcgaatatctgccc
gacaatgcgctgctcttcgtcgacgagagccaccagacgatcccgcagatcggcgcgatg
tcgaagggtgaccatcgccgcaagatcaccctcgccgaatatggcttccgcctgccgagc
tgcatcgacaaccggccgctgcgcttcgccgagtgggacatgatgcgcccgcagacgatc
agcgtatcggcgacgccggggacgtgggagatggagcgcacgcagggcgtcttcgccgaa
caggtgatccgccccaccggcctcatcgacccgccggtcgagatcaagccggtcgaggaa
caggtcgacgatctgatcgccgaggcgaaaaagaccgccgcggcgggataccgcacgctg
gtgacgacgctgaccaagcgcatggccgaagacctcaccgagtttctccacgaggccggg
ctgaaggtccgctacatgcactcggacgtcgagacattggagcgcatcgagatcatccgc
gacctgcgtttgggggtgttcgacgtgctcgtcggcatcaacctgctgcgcgaggggctc
gacattcccgaatgcgggctcgttgcgatcctcgacgccgacaaggaaggcttcctgcgc
agcgaaaccagcctcgtccagacgatcggccgcgccgcgcgcaacgtcgacggccgcgtc
atcctctacgccgatcgcatcaccggcagcatggaacgcgcgctgcgcgaaaccgaccgg
cgccgcgcgaagcaacaggcgtataacgaggcgcacggcattaccccgacgacgatcaag
cgcaacatcggcgacatcatcgcgcatgtcgcgtcgaaggacggcgtcgtcatcgacatc
ggcgaggacaagcccgcgcacatggtcgggcacaacctccgcgcctatatccaggagctg
gaaaagaagatgcgcgacgcggcggcggacctcgagttcgaggaagccggccgcctccgc
gacgaaatccgcaagctggaagccgacgagctgggcctgccgcccgaccagcagatcgcg
ccgcgcgtgggccgcagcaacgagggcaagccggggacgaggaaagggcggttcgggaag
cagagcaagacgaagtgggggcggtag
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integrated database retrieval system
