Sphingopyxis sp. FD7: SPYCA_2486
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Entry
SPYCA_2486 CDS
T10393
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spfd Sphingopyxis sp. FD7
Pathway
spfd03018
RNA degradation
Brite
Enzymes [BR:
spfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPYCA_2486
Messenger RNA biogenesis [BR:
spfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPYCA_2486
DNA repair and recombination proteins [BR:
spfd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SPYCA_2486
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BBB13228
UniProt:
A0A2Z5UP56
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Position
complement(2610932..2612713)
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AA seq
593 aa
AA seq
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MPSPADALLPLLKSTFGFDHFRGRQADVVARVMAGERTLAVMPTGAGKSLTYQLPAVALD
GCVVVVSPLIALMHDQLRGARAAGIRAASLTSVDADFADTRQAYRDGQLDLLYIAPERAT
GEGFRSLMEARTPALFAIDEAHCVSEWGHDFRPDYRLLRPLLDAFPSVPRLALTATADRH
TREDILVQLGIPADGLVLAGFDRPNIRYRVMPRVSPAKQLADFIAANPGPGIVYCPTRDG
TERMADRLAAATGRSVAAYHAGLDPERRMAVQHDFVASEDGIVTATVAFGMGIDKPDVRF
VAHAGLPKSIESYYQETGRAGRDGDPAEALMLWAADDFARARARLSELPEARVAGERARL
DALAALVETVECRRALLLRHFGENPPTRCGNCDTCLDPPKQLDATVLAQKLMSAVYRTGQ
SFGAGHVEAVLTGKRDARVVSRGHDKLSVFGIVEGEEARLIKPLVRTLMAREALATTEHG
GLMFGPAGRAVMKGEAPVLIAEPPAKRTQRPSRSDRGAANPVGDPLFEALRSVRRELAAE
AGVPPYVVFHDAVLRAMASERPATRSDLAAIPGVGAKKLEAWGDAFLNVIRRF
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgccctctcccgccgacgcgcttctccccctcctcaaatccaccttcggtttcgaccat
tttcgtggccgtcaggccgatgtcgtcgctcgcgtcatggcgggcgagcgcacgctggcg
gtgatgccgacgggggcgggcaagtcgctgacctatcagctgcccgcggtggcgctcgac
ggctgcgtcgtcgtcgtgtcgccgctgatcgcgctgatgcacgaccagctgcgcggggcg
cgggcggcggggataagagcggcgtcgctgaccagcgtcgatgccgatttcgccgatacc
cgccaggcctatcgcgacggccagctcgacctcctctatatcgcgccggagcgcgcgacg
ggggaggggttccggtcgctgatggaggcgcggacgcccgcgctgttcgcgatcgacgaa
gcgcattgcgtcagcgagtgggggcatgatttccggcccgattaccggttgctgcgcccg
ctgctcgacgcctttccctcggtgccgcgactggcgctcaccgcgaccgccgaccggcac
acgcgcgaggacatattggtccagctcggcattcccgccgacggtctcgtgctcgcgggc
ttcgatcggccgaacattcgctaccgcgtgatgccgcgcgtcagcccggcgaagcagctc
gccgatttcatcgccgccaatccggggccggggatcgtctattgcccgacgcgcgacggg
accgagcggatggccgaccggctcgccgcggcgacggggcgcagcgtggccgcctatcac
gccgggctcgaccctgaacgacgcatggctgtgcagcatgattttgtggcgtcggaggac
ggcatcgtcaccgcgacggtcgccttcggcatggggatcgacaagcccgacgtgcgcttc
gtcgcgcacgccgggctgccgaaatcgatcgagagctattatcaggaaaccggccgcgcg
gggcgcgacggcgatccggccgaggcgctgatgctgtgggcggccgacgatttcgcgcgc
gcgcgtgcgcggctgtccgaactgcccgaggcgcgcgtggcgggcgagcgggcgcggctc
gatgcgctcgcggcgctggtcgaaacggtcgagtgccgccgcgcgctgctgctgcgccat
ttcggcgagaatccgccgacacgctgcggcaattgcgacacctgcctcgatccccccaaa
caactcgacgcgacggtgctcgcgcagaaactgatgagcgcggtctatcgcaccgggcag
agctttggcgcgggccatgtcgaggcggtgctgaccggcaagcgcgacgcgcgggtcgtc
agccgcgggcacgacaagctctcggtttttggcatcgtcgagggcgaagaagcgcggctc
atcaagccgctggtgcgcacgctgatggcacgcgaggcacttgcgaccaccgagcatggc
gggctgatgttcggtcctgcgggccgcgcggtgatgaagggcgaggccccggtgctgatc
gccgagccgccggcgaagcgcacgcagcggcccagccgaagcgaccgaggcgccgccaat
cccgtcggcgacccgctgttcgaggcgctgcgcagcgtccggcgcgagctcgccgccgag
gcgggcgtgcccccctatgtcgtcttccacgacgcggtgctgcgcgcgatggcgagcgaa
cgtccggcgacgcgcagcgacctggccgcgatcccgggggtcggcgcgaagaagctcgag
gcttggggcgatgcgtttctgaatgtgatccgacggttttga
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